View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4321-Insertion-6 (Length: 77)
Name: NF4321-Insertion-6
Description: NF4321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4321-Insertion-6 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 75; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-35
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 41622406 - 41622480
Alignment:
| Q |
3 |
accaatagaagaaaagccaagtcatcaaagtgggattaacaaattggttagtgaaaatggacatgtgtcaattga |
77 |
Q |
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| T |
41622406 |
accaatagaagaaaagccaagtcatcaaagtgggattaacaaattggttagtgaaaatggacatgtgtcaattga |
41622480 |
T |
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Target: chr7 (Bit Score: 45; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 1770132 - 1770204
Alignment:
| Q |
5 |
caatagaagaaaagccaagtcatcaaagtgggattaacaaattggttagtgaaaatggacatgtgtcaattga |
77 |
Q |
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| T |
1770132 |
caatagacgaaaagctaagtcatcaaagtggaatcaacaaagttgttagagaaaatggacatgtgtcaattga |
1770204 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 42955136 - 42955066
Alignment:
| Q |
6 |
aatagaagaaaagccaagtcatcaaagtgggattaacaaattggttagtgaaaatggacatgtgtcaattga |
77 |
Q |
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| T |
42955136 |
aatataagcaaagccaagtcatcaaagtggaattaac-aattggttagagaaaagggacatgtgtcacttga |
42955066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 29409456 - 29409384
Alignment:
| Q |
5 |
caatagaagaaaagccaagtcatcaaagtgggattaacaaattggttagtgaaaatggacatgtgtcaattga |
77 |
Q |
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| T |
29409456 |
caatagagaaaaagccaagttatcaaagtggagtcaacaaattggtttgtgaaaatggacacgtgtcacttga |
29409384 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 34
Target Start/End: Original strand, 7139076 - 7139107
Alignment:
| Q |
3 |
accaatagaagaaaagccaagtcatcaaagtg |
34 |
Q |
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| T |
7139076 |
accaatagaagaaaagccaagtcatcaaagtg |
7139107 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 32772441 - 32772477
Alignment:
| Q |
41 |
acaaattggttagtgaaaatggacatgtgtcaattga |
77 |
Q |
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| T |
32772441 |
acaaattggttagtgaaaatggacttgtgtcacttga |
32772477 |
T |
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