View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4321-Insertion-7 (Length: 59)
Name: NF4321-Insertion-7
Description: NF4321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4321-Insertion-7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 59; Significance: 8e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-26
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3698767 - 3698709
Alignment:
| Q |
1 |
cctctgacttccaccataaatcctctggaatgcaccaacaccgagtccacccctcaagt |
59 |
Q |
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| T |
3698767 |
cctctgacttccaccataaatcctctggaatgcaccaacaccgagtccacccctcaagt |
3698709 |
T |
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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3703711 - 3703653
Alignment:
| Q |
1 |
cctctgacttccaccataaatcctctggaatgcaccaacaccgagtccacccctcaagt |
59 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3703711 |
cctctggcttccaccataaatcctctggaatgcaccaacaccgagtccacccctcaagt |
3703653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15179485 - 15179526
Alignment:
| Q |
1 |
cctctgacttccaccataaatcctctggaatgcaccaacacc |
42 |
Q |
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| T |
15179485 |
cctctgactcccaccgtaaatcctctggaatgaaccaacacc |
15179526 |
T |
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