View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4321_low_1 (Length: 770)

Name: NF4321_low_1
Description: NF4321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4321_low_1
NF4321_low_1
[»] chr3 (2 HSPs)
chr3 (341-753)||(53419311-53419723)
chr3 (111-149)||(26452749-26452787)
[»] chr6 (1 HSPs)
chr6 (613-707)||(25014424-25014518)
[»] chr4 (4 HSPs)
chr4 (55-93)||(2605472-2605510)
chr4 (458-547)||(12734466-12734558)
chr4 (111-144)||(15522361-15522394)
chr4 (23-85)||(53860796-53860860)
[»] chr7 (5 HSPs)
chr7 (35-89)||(33807559-33807616)
chr7 (111-149)||(34108881-34108919)
chr7 (111-149)||(34507232-34507270)
chr7 (55-93)||(37701257-37701295)
chr7 (111-149)||(42584809-42584847)
[»] chr2 (1 HSPs)
chr2 (55-85)||(19987135-19987165)
[»] chr1 (1 HSPs)
chr1 (33-93)||(30018666-30018727)


Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 341 - 753
Target Start/End: Original strand, 53419311 - 53419723
Alignment:
Q  341 gaagtattgatatatctagttggctctgattaaaaccaccaccagcccagccccaaaagactccttagtggattgtttcctagtacataatacattttta 440  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  53419311 gaagtgttgatatatctagttggctctgattaaaaccaccaccagcccagccccaaaaggctccttagtggattgtttcctagtacataatacatttttg 53419410  T
Q  441 aaatggtaggatatggtaagatacaccatcgtggttcaacattgccatcaatgaatgtgaacccaaaacatgttggttgtcgtgaagacaaatatttcca 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53419411 aaatggtaggatatggtaagatacaccatcgtggttcaacattgccatcaatgaatgtgaacccaaaacatgttggttgtcgtgaagacaaatatttcca 53419510  T
Q  541 atcatcatgttggttgttaaatcctgcttccatcgaaatctctctcaattcttttctctgttcagttcataatattcttactgactgctggatcaatcga 640  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53419511 atcatcatgttggttgttaaatcctgcttccatcgaaatctctctcaattcttttctctgttcagttcataatattcttactgactgctggatcaatcga 53419610  T
Q  641 ttgctttcgttctcctattatgtgggatgaagatgcacattaaaaatgtaggtcctgaatttgttgatactttcgagtactggacaaaatcccttgatcc 740  Q
    | |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  53419611 tagctttcattctcctattatgcgggatgaagatgcacattaaaaatgtaggtcctgaatttgttgatactttcaagtactggacaaaatcccttgatcc 53419710  T
Q  741 actggtaattgag 753  Q
    |||||||||||||    
T  53419711 actggtaattgag 53419723  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 26452787 - 26452749
Alignment:
Q  111 gatatatatacaaccattttctaacaacttttgttacaa 149  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26452787 gatatatatacaaccattttctaacaacttttgttacaa 26452749  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 613 - 707
Target Start/End: Original strand, 25014424 - 25014518
Alignment:
Q  613 tattcttactgactgctggatcaatcgattgctttcgttctcctattatgtgggatgaagatgcacattaaaaatgtaggtcctgaatttgttga 707  Q
    |||||||| ||||||||  ||||||||||  ||||| |||| |||  || |||||||| | ||||||||||||||||||||||||||||| ||||    
T  25014424 tattcttattgactgctcaatcaatcgatatctttcattcttctaacatatgggatgatggtgcacattaaaaatgtaggtcctgaatttattga 25014518  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 2605472 - 2605510
Alignment:
Q  55 tttttgatcatttccatatgtttctaggaaataatggat 93  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  2605472 tttttgatcatttccatgtgtttctaggaaataatggat 2605510  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 547
Target Start/End: Complemental strand, 12734558 - 12734466
Alignment:
Q  458 aagatacaccatcgtggttcaacattgccatcaatgaatgtgaacccaaaacatgttggttgtcgtga---agacaaatatttccaatcatca 547  Q
    |||||||| |||||||||||||| || |||||| || ||||  ||||||||||| | || ||||||||    ||||||||||| |||||||||    
T  12734558 aagatacatcatcgtggttcaactttaccatcattggatgtacacccaaaacatatggggtgtcgtgatggcgacaaatattttcaatcatca 12734466  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 15522361 - 15522394
Alignment:
Q  111 gatatatatacaaccattttctaacaacttttgt 144  Q
    ||||||| ||||||||||||||||||||||||||    
T  15522361 gatatatgtacaaccattttctaacaacttttgt 15522394  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 53860860 - 53860796
Alignment:
Q  23 ttataagccagcggtagttaactatcattggattttt--gatcatttccatatgtttctaggaaa 85  Q
    ||||||| ||||||| |||||||| | ||||||||||  | |||||||||| |||||||||||||    
T  53860860 ttataagtcagcggtggttaactaccgttggatttttttggtcatttccatgtgtttctaggaaa 53860796  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 33807616 - 33807559
Alignment:
Q  35 ggtagttaactatcattggattt---ttgatcatttccatatgtttctaggaaataat 89  Q
    ||||||||||||||| |||||||   || ||||||| |||||||||||||||||||||    
T  33807616 ggtagttaactatcactggatttatttttatcatttgcatatgtttctaggaaataat 33807559  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 34108919 - 34108881
Alignment:
Q  111 gatatatatacaaccattttctaacaacttttgttacaa 149  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  34108919 gatatatgtacaaccattttctaacaacttttgtgacaa 34108881  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 34507270 - 34507232
Alignment:
Q  111 gatatatatacaaccattttctaacaacttttgttacaa 149  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  34507270 gatatatatacaacaattttctaacaacttttgtgacaa 34507232  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 37701295 - 37701257
Alignment:
Q  55 tttttgatcatttccatatgtttctaggaaataatggat 93  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  37701295 tttttgatcatttccatatgtttctaagaaacaatggat 37701257  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 42584809 - 42584847
Alignment:
Q  111 gatatatatacaaccattttctaacaacttttgttacaa 149  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  42584809 gatatatgtacaaccattttctaacaacttttgtgacaa 42584847  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 85
Target Start/End: Original strand, 19987135 - 19987165
Alignment:
Q  55 tttttgatcatttccatatgtttctaggaaa 85  Q
    |||||||||||||||||||||||||||||||    
T  19987135 tttttgatcatttccatatgtttctaggaaa 19987165  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 30018666 - 30018727
Alignment:
Q  33 gcggtagttaactatcattggatttttgatcatttccatatg-tttctaggaaataatggat 93  Q
    |||||||||||||| | |||| |||||| |||||||||| || ||||||||||| |||||||    
T  30018666 gcggtagttaactaccgttgggtttttggtcatttccatgtgttttctaggaaacaatggat 30018727  T

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