View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4321_low_2 (Length: 297)
Name: NF4321_low_2
Description: NF4321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4321_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 34695185 - 34695344
Alignment:
| Q |
18 |
tgatcttgctcctctccctccggccattgacatgagtgcacctgctgatattccattcctctttactggtgatcaatttcaaggtaataaatattcattt |
117 |
Q |
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| T |
34695185 |
tgatcttgctcctctccctccggccattgacatgagtgcacctgctgatattccattcctctttactggtgatcaatttcaaggtaataaatattaattt |
34695284 |
T |
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| Q |
118 |
ttataaagtgattgaacttaagtggtaaataatttcaattaaagatgaatatttgaaaac |
177 |
Q |
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| T |
34695285 |
ttataaagtgattgaacttaagtggtaaataatttcaattaaagatgaatatttgaaaac |
34695344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 175 - 297
Target Start/End: Original strand, 34697071 - 34697193
Alignment:
| Q |
175 |
aacaaactgatttaaatcctagtttgaacaannnnnnnatcaaactttacttatgtgtcaaactctaaatttcctatagtcccttcttaaaaaacagaag |
274 |
Q |
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| T |
34697071 |
aacaaactgatttaaatcctagttttaacaatttttttatcaaactttacttatgtgtcaaactctaaattacctatagtcccttcttaaaaaacagaag |
34697170 |
T |
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| Q |
275 |
gtttggacataatatatatcaat |
297 |
Q |
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| T |
34697171 |
gtttggacaaaatatatatcaat |
34697193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 34687256 - 34687341
Alignment:
| Q |
18 |
tgatcttgctcctctccctccggccattgacatgagtgcacctgctgatattccattcctctttactggtgatcaatttcaaggta |
103 |
Q |
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| T |
34687256 |
tgatcttgctcctctacctccggccattgacatgagtgcacctgttgatgttccattcctttttaccggtgatcaacttcaaggta |
34687341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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