View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4322-Insertion-10 (Length: 182)
Name: NF4322-Insertion-10
Description: NF4322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4322-Insertion-10 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 3e-96; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 7704108 - 7703927
Alignment:
| Q |
1 |
actgtgaaggacttcatggtggtaaattttgttccaccatattccttattgtccatggacaaaatggaagacttaaagttgagaactttgcaaccaactt |
100 |
Q |
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| T |
7704108 |
actgtgaaggacttcatggtggtaaattttgttccaccatattccttattgtccatgggcaaaatggaagacttaaagttgagaactttgcaaccaactt |
7704009 |
T |
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| Q |
101 |
taattgatttcacatcaattaaatattcataaaaagcatcacctttaccagatattggagcagtgctaaaggggtttacaca |
182 |
Q |
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| T |
7704008 |
taattgatttcacatcaattaaatattcataaaaagcatcacctttaccagatattggagcagtgctaaaggggtttacaca |
7703927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 7699390 - 7699227
Alignment:
| Q |
13 |
ttcatggtggtaaattttgttccaccatattccttattgtccatggacaaaatggaagacttaaagttgagaactttgcaaccaactttaattgatttca |
112 |
Q |
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| T |
7699390 |
ttcatggtgctaatttttgtcccaccatttcccttattgtcaatggacaaaagggaagacttaaagttaagaatttcaccaccaactttaattgatttca |
7699291 |
T |
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| Q |
113 |
catcaattaaatattcataaaaagcatcacctttaccagatattggagcagtgctaaaggggtt |
176 |
Q |
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| T |
7699290 |
catcaatgaaatattcataagaagcatcacctttagtaaatattggagcagtgctaaaggggtt |
7699227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 4 - 176
Target Start/End: Complemental strand, 7711422 - 7711250
Alignment:
| Q |
4 |
gtgaaggacttcatggtggtaaattttgttccaccatattccttattgtccatggacaaaatggaagacttaaagttgagaactttgcaaccaactttaa |
103 |
Q |
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| T |
7711422 |
gtgaaggacttcattgtgctaagttttgttccaccatttcccttattgtcaatggacaaaagggaggacttgaagctcagaacttcaccaccaactttaa |
7711323 |
T |
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| Q |
104 |
ttgatttcacatcaattaaatattcataaaaagcatcacctttaccagatattggagcagtgctaaaggggtt |
176 |
Q |
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| T |
7711322 |
ttgatttcacatcaataaagtattcataagaagcatcaccttcagtaaatattggagcagtgctaaaggggtt |
7711250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 7733732 - 7733563
Alignment:
| Q |
4 |
gtgaaggacttcatggtggtaaattttgttccaccatattccttattgtccatggacaaaatggaagacttaaagttgagaactttgcaaccaactttaa |
103 |
Q |
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| T |
7733732 |
gtgaaggacttcattgtgctaagttttgttccaccatttcccttattgtcaatggacaaaagggaagacttgaagctcagaacttcaccaccaactttaa |
7733633 |
T |
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| Q |
104 |
ttgatttcacatcaattaaatattcataaaaagcatcacctttaccagatattggagcagtgctaaaggg |
173 |
Q |
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| T |
7733632 |
ttgatttcacatcaataaagtattcataagaagcatcaccatcggtaaatattggagcagtgctaaaggg |
7733563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 27 - 176
Target Start/End: Original strand, 7746193 - 7746342
Alignment:
| Q |
27 |
ttttgttccaccatattccttattgtccatggacaaaatggaagacttaaagttgagaactttgcaaccaactttaattgatttcacatcaattaaatat |
126 |
Q |
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| T |
7746193 |
ttttgttccaccatttcccttattgtcaatggacaaaatggaagacttaaagctaacaatttcaccaccaactttaattgatttcacatcaatgaaatat |
7746292 |
T |
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| Q |
127 |
tcataaaaagcatcacctttaccagatattggagcagtgctaaaggggtt |
176 |
Q |
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| T |
7746293 |
tcataagaagcatcaccttgggaaaatattggagcagtgctaaaggggtt |
7746342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 7726310 - 7726141
Alignment:
| Q |
4 |
gtgaaggacttcatggtggtaaattttgttccaccatattccttattgtccatggacaaaatggaagacttaaagttgagaactttgcaaccaactttaa |
103 |
Q |
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| T |
7726310 |
gtgaagggattcattgtgctaagttttgttccgccatttcccttattgtcaatggacaaaagggaagacttgaagttcagaacttcaccaccaactttaa |
7726211 |
T |
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| Q |
104 |
ttgatttcacatcaattaaatattcataaaaagcatcacctttaccagatattggagcagtgctaaaggg |
173 |
Q |
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| T |
7726210 |
ttgatttcacatcaataaagtattcataagaagcatcaccttcggtaaatattggagcagtgctaaaggg |
7726141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 7749541 - 7749428
Alignment:
| Q |
27 |
ttttgttccaccatattccttattgtccatggacaaaatggaagacttaaagttgagaactttgcaaccaactttaattgatttcacatcaattaaatat |
126 |
Q |
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| T |
7749541 |
ttttgttccacattttcccttgttgtcaatggacaaaagagaagacctaatgttgagacttttgccagcaattttaatttatttcacatctatgaagtac |
7749442 |
T |
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| Q |
127 |
tcataaaaagcatc |
140 |
Q |
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| T |
7749441 |
tcataagaagcatc |
7749428 |
T |
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