View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4322-Insertion-12 (Length: 50)
Name: NF4322-Insertion-12
Description: NF4322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4322-Insertion-12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 42; Significance: 8e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 8e-16
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 32591079 - 32591120
Alignment:
| Q |
8 |
ccaagaagcaaatgttttggcatcttgtatttcatgtcccaa |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32591079 |
ccaagaagcaaatgttttggcatcttgtatttcatgtcccaa |
32591120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 32601548 - 32601586
Alignment:
| Q |
8 |
ccaagaagcaaatgttttggcatcttgtatttcatgtcc |
46 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32601548 |
ccaagaagcaaatgttttggcatcttgtatttcatgtcc |
32601586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 34578893 - 34578933
Alignment:
| Q |
8 |
ccaagaagcaaatgttttggcatcttgtatttcatgtccca |
48 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34578893 |
ccaagaagcaaatgttttggcatcttgtatttcatgtccca |
34578933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 35124581 - 35124619
Alignment:
| Q |
8 |
ccaagaagcaaatgttttggcatcttgtatttcatgtcc |
46 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35124581 |
ccaagaagcaaatgttttggcatcttgtatttcatgtcc |
35124619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 34594634 - 34594674
Alignment:
| Q |
8 |
ccaagaagcaaatgttttggcatcttgtatttcatgtccca |
48 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
34594634 |
ccaagaagcaaatgttttagcatcttgttcttcatgtccca |
34594674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University