View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4322-Insertion-14 (Length: 237)
Name: NF4322-Insertion-14
Description: NF4322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4322-Insertion-14 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 27867565 - 27867326
Alignment:
| Q |
3 |
cattcttcattacagacgttctagaaatttcaaaggccacatgcaaactnnnnnnnnt-tactttacaaattttaccgcgaaatcattaattattcattc |
101 |
Q |
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| T |
27867565 |
cattcttcattacagacgttctagaaatttcaaaggccacatgcaaactaaaaaaacaattctttacaaattttaccgcgaaatcattaattattcattc |
27867466 |
T |
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| Q |
102 |
ctattcaagattattttcggaaaaaa-ccgttttaat--aaaagtaaagcaaaa-catacattgtaacatagttgtttttatatgaaaatatggatgaat |
197 |
Q |
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| T |
27867465 |
ctattcaagattattttcgaaaaaaaaccgttttaaataaaaagtaaagcaaaaacatacattgtaacatagttgtttttatatgaaaatatggatgaat |
27867366 |
T |
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| Q |
198 |
cacgagagttggtgatgtagactttacgtcttgatattag |
237 |
Q |
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| T |
27867365 |
cacgagagttggtgatgtagactttacgtcttgatattag |
27867326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 28029145 - 28028901
Alignment:
| Q |
3 |
cattcttcattacagacgttctagaaatttcaaaggccacatgcaaactnnnnnnnnttactttacaaattttaccgcgaaatcattaattatt------ |
96 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||| |
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| T |
28029145 |
cattcttcattactgacgttctagaaatttcaaaggccacatgcaaactaaaaaaattt-ctttacaaattttaccgcgaaaccattaattattaattat |
28029047 |
T |
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| Q |
97 |
-cattcctattcaagattattttc-ggaaaaaaccgttttaat--aaaagtaaagcaaaa-catacattgtaacatagttgtttttatatgaaaatatgg |
191 |
Q |
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| T |
28029046 |
tcattcctattcaagattattttcaggaaaaaaccgttttaaatgaaaagtaaagcaaaaacatacattgtaacatagttgattatgtatgagaatatgg |
28028947 |
T |
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| Q |
192 |
atgaatcacgagagttggtgatgtagactttacgtcttgatattag |
237 |
Q |
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| T |
28028946 |
atgaatcacgggagttggtgatgcaaactttacatcttgatattag |
28028901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 27971876 - 27971632
Alignment:
| Q |
3 |
cattcttcattacagacgttctagaaatttcaaaggccacatgcaaactnnnnnnnnttactttacaaattttaccgcgaaatcattaattatt------ |
96 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |
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| T |
27971876 |
cattcttcattactgacgttctagaaatttcaaaggccacatgcaaactaaaaaaatct-ctttacaaattttaccgcgaaaccattaattattaattat |
27971778 |
T |
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| Q |
97 |
-cattcctattcaagattattttc-ggaaaaaaccgttttaat--aaaagtaaagcaaaa-catacattgtaacatagttgtttttatatgaaaatatgg |
191 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| || | ||||| ||||||| |
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| T |
27971777 |
tcattcctattcaagattattttcaggaaaaaaccgttttaaatgaaaagtaaagcaaaaacatacattgtaacatagttgattatgtatgagaatatgg |
27971678 |
T |
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| Q |
192 |
atgaatcacgagagttggtgatgtagactttacgtcttgatattag |
237 |
Q |
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| T |
27971677 |
atgaatcacgggagttggtgatgcaaactttacatcttgatattag |
27971632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 27911656 - 27911574
Alignment:
| Q |
155 |
tacattgtaacatagttgtttttatatgaaaatatggatgaatcacgagagttggtgatgtagactttacgtcttgatattag |
237 |
Q |
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| T |
27911656 |
tacattgtaacatagttgattttgtaagagaatatggttgaatcacgagagttggtgatgcagactttatgtcttgatattag |
27911574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 27958075 - 27957993
Alignment:
| Q |
155 |
tacattgtaacatagttgtttttatatgaaaatatggatgaatcacgagagttggtgatgtagactttacgtcttgatattag |
237 |
Q |
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| T |
27958075 |
tacattgtaacatagttgattttgtaagagaatatggttgaatcacgagagttggtgatgcagactttatgtcttgatattag |
27957993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 27913673 - 27913638
Alignment:
| Q |
3 |
cattcttcattacagacgttctagaaatttcaaagg |
38 |
Q |
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| T |
27913673 |
cattcttcgttacagacgttctagaaatttcaaagg |
27913638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 27960092 - 27960057
Alignment:
| Q |
3 |
cattcttcattacagacgttctagaaatttcaaagg |
38 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
27960092 |
cattcttcgttacagacgttctagaaatttcaaagg |
27960057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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