View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4322-Insertion-19 (Length: 98)

Name: NF4322-Insertion-19
Description: NF4322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4322-Insertion-19
NF4322-Insertion-19
[»] chr3 (2 HSPs)
chr3 (61-98)||(13218681-13218718)
chr3 (61-98)||(39777917-39777954)
[»] scaffold0002 (1 HSPs)
scaffold0002 (61-98)||(238991-239028)


Alignment Details
Target: chr3 (Bit Score: 38; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 13218718 - 13218681
Alignment:
Q  61 gatcccaaattgcatgagcaataggtcttacatgtaaa 98  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13218718 gatcccaaattgcatgagcaataggtcttacatgtaaa 13218681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 39777917 - 39777954
Alignment:
Q  61 gatcccaaattgcatgagcaataggtcttacatgtaaa 98  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39777917 gatcccaaattgcatgagcaataggtcttacatgtaaa 39777954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 238991 - 239028
Alignment:
Q  61 gatcccaaattgcatgagcaataggtcttacatgtaaa 98  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  238991 gatcccaaatcgcatgagcaataggtcttacgtgtaaa 239028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University