View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4322-Insertion-25 (Length: 122)
Name: NF4322-Insertion-25
Description: NF4322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4322-Insertion-25 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 106; Significance: 2e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 23047121 - 23047000
Alignment:
| Q |
1 |
tgattgaagatactgggattggatgaagataaagatgttgcttgaatttcgttttccagaatttcaatttgaagatgaattgatgaaggattgaatggaa |
100 |
Q |
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| T |
23047121 |
tgattgaagatactgggattggatgaagataaagatgctgcttgaatttcgttttccagaattttaatttgaagatgaattgatgaaggattgaatggaa |
23047022 |
T |
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| Q |
101 |
tagaacatcaaagaagaggaag |
122 |
Q |
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|||||| |||||||||||||| |
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| T |
23047021 |
aagaacagcaaagaagaggaag |
23047000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 44098581 - 44098702
Alignment:
| Q |
1 |
tgattgaagatactgggattggatgaagataaagatgttgcttgaatttcgttttccagaatttcaatttgaagatgaattgatgaaggattgaatggaa |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44098581 |
tgattgaagatactgggagtggatgaagataaagatactgcttgaatttcgttttccagaatttcaatttgaagatgaattgatgaaggattgaatggaa |
44098680 |
T |
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| Q |
101 |
tagaacatcaaagaagaggaag |
122 |
Q |
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|||||| |||||||||||||| |
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| T |
44098681 |
cagaacaacaaagaagaggaag |
44098702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 45517608 - 45517656
Alignment:
| Q |
53 |
tttccagaatttcaatttgaagatgaattgatgaaggattgaatggaat |
101 |
Q |
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| T |
45517608 |
tttccaaaatttcgatttgaagatgaattgatgaaggattgaatagaat |
45517656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 45268231 - 45268289
Alignment:
| Q |
43 |
tgaatttcgttttccagaatttcaattt---gaagatgaattgatgaaggattgaatgg |
98 |
Q |
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| T |
45268231 |
tgaatttcgttttctagaatcttaatttaaagaagatgaattgatgaaggtttgaatgg |
45268289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 50563446 - 50563499
Alignment:
| Q |
51 |
gttttccagaatttcaatttgaaga---tgaattgatgaaggattgaatggaat |
101 |
Q |
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| T |
50563446 |
gttttccaaaatttcgatttgaagaaaatgaattgatgaaggattgaatagaat |
50563499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 9454612 - 9454665
Alignment:
| Q |
51 |
gttttccagaatttcaatttgaaga---tgaattgatgaaggattgaatggaat |
101 |
Q |
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|||||||| |||||| ||||||||| ||||||||||||||||||||| |||| |
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| T |
9454612 |
gttttccaaaatttcgatttgaagaaaatgaattgatgaaggattgaatagaat |
9454665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 24426331 - 24426274
Alignment:
| Q |
43 |
tgaatttcgttttccagaatttcaatttga---agatgaattgatgaaggattgaatg |
97 |
Q |
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||||||| |||||||||||||| |||||| |||||||||||||||| |||||||| |
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| T |
24426331 |
tgaatttagttttccagaattttgatttgattaagatgaattgatgaagcattgaatg |
24426274 |
T |
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