View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4322-Insertion-5 (Length: 173)
Name: NF4322-Insertion-5
Description: NF4322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4322-Insertion-5 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 161; Significance: 4e-86; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 7739676 - 7739504
Alignment:
| Q |
1 |
cagccgtggctggggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7739676 |
cagccgtggctggggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactggg |
7739577 |
T |
|
| Q |
101 |
cctattcctagctctttcagcaaactccaaagactacaaagactcgaccttggttccaacagtcttagtgggt |
173 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7739576 |
ccaattcctaactctttcagcaaactccaaagactacaaaaactcgaccttggttccaacagtcttagtgggt |
7739504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 7727358 - 7727187
Alignment:
| Q |
1 |
cagccgtggctggggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactggg |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
7727358 |
cagccgtggctggggtctttctggtacgcttccagcagagtttggcgacctcccatatcttaacttcctctcattggctgaaatgcccaaagtaaccgga |
7727259 |
T |
|
| Q |
101 |
cctattcctagctctttcagcaaactccaaagactacaaagactcgaccttggttccaacagtcttagtggg |
172 |
Q |
| |
|
|| || |||| |||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
7727258 |
ccaatccctaactctttcagcaaactcaaaagactacaaaaacttgaccttggttccaacagtcttagtggg |
7727187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 7731518 - 7731347
Alignment:
| Q |
1 |
cagccgtggctggggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
7731518 |
cagccgtggctggggtctttccggtacgcttccagtagagtttggcgacctcccttatcttaacttcctctcattagccgaaatgccgaaagtaactggg |
7731419 |
T |
|
| Q |
101 |
cctattcctagctctttcagcaaactccaaagactacaaagactcgaccttggttccaacagtcttagtggg |
172 |
Q |
| |
|
|| || |||| |||||| ||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
7731418 |
ccaatccctaactcttttagcaaactcaaaagactacaaaaacttgaccttggttccaacagtcttagtggg |
7731347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 7699496 - 7699325
Alignment:
| Q |
1 |
cagccgtggctggggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |||| || ||||||| | | |||||||||||||||||||| |||||||||||| |
|
|
| T |
7699496 |
cagccgtggctggggtctttccggtacgcttccagcggagtttggcaacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactggg |
7699397 |
T |
|
| Q |
101 |
cctattcctagctctttcagcaaactccaaagactacaaagactcgaccttggttccaacagtcttagtggg |
172 |
Q |
| |
|
|| || |||| |||||| |||||||||||||||||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
7699396 |
ccaatccctaactcttttagcaaactccaaagactacaaaatctagaccttggttccaacagccttagtggg |
7699325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 102; E-Value: 6e-51
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 7713839 - 7713670
Alignment:
| Q |
3 |
gccgtggctggggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggcc |
102 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||| || ||||||| | | |||||||||||||||||||| |||||||||||||| |
|
|
| T |
7713839 |
gccgtggctggggtctttccggtacacttccagcggagtttggcgacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactgggcc |
7713740 |
T |
|
| Q |
103 |
tattcctagctctttcagcaaactccaaagactacaaagactcgaccttggttccaacagtcttagtggg |
172 |
Q |
| |
|
|| |||| |||||||||||||||| |||||||| ||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
7713739 |
aatccctaactctttcagcaaactcaaaagactagaaaatctcgaccttggctccaacagccttagtggg |
7713670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University