View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4322_high_2 (Length: 324)
Name: NF4322_high_2
Description: NF4322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4322_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 6 - 314
Target Start/End: Original strand, 23597709 - 23598017
Alignment:
| Q |
6 |
gatggacatcatcttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtgttg |
105 |
Q |
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| T |
23597709 |
gatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtgctg |
23597808 |
T |
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| Q |
106 |
gtggtgatgctggaggagccatggatgagaatggacctgctgctggcagtggaagtggtgctggccccaaaattgaggaagttgattaagcggaactttt |
205 |
Q |
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| T |
23597809 |
gtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtggtgctggccccaaaattgaggaagttgattaagcggaactttt |
23597908 |
T |
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| Q |
206 |
gtaatggaatttatgtgtggttcaggattttgcaaggactcttttgaaatagcatcctagtaatatgtatgtgttttggtttaagtagtacagagagctc |
305 |
Q |
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| T |
23597909 |
gtaatgggatttatgtgtggttcaggattttgcaaggactcttttgaaatagcatcctagtaatatgtatgtgttttggtttagctagtacagcgagctc |
23598008 |
T |
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| Q |
306 |
tatcttatt |
314 |
Q |
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| T |
23598009 |
tgtcttatt |
23598017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 6 - 236
Target Start/End: Original strand, 23588857 - 23589087
Alignment:
| Q |
6 |
gatggacatcatcttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtgttg |
105 |
Q |
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| T |
23588857 |
gatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaaccctatcattgcaaggatgtatcaaggtgctg |
23588956 |
T |
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| Q |
106 |
gtggtgatgctggaggagccatggatgagaatggacctgctgctggcagtggaagtggtgctggccccaaaattgaggaagttgattaagcggaactttt |
205 |
Q |
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| T |
23588957 |
gtggagatgctggaggagccatggatgaggatggtcctacagctggcagtggaagcggtgctggccccaaaattgaggaagttgattaagctaaactttg |
23589056 |
T |
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| Q |
206 |
gtaatggaatttatgtgtggttcaggatttt |
236 |
Q |
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| T |
23589057 |
ttcatgggattgatgggtggttcatgatttt |
23589087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 39984678 - 39984594
Alignment:
| Q |
18 |
cttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
102 |
Q |
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| T |
39984678 |
cttgcagaggctgatgagtttgaggacaagatgaaggaacttgaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
39984594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 8018554 - 8018633
Alignment:
| Q |
23 |
agaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
102 |
Q |
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| T |
8018554 |
agaggctgatgagtttgaagataagatgaaggaacttgagagcctttgcaacccaatcattgccaagatgtatcaaggtg |
8018633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 8101687 - 8101615
Alignment:
| Q |
30 |
gatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
102 |
Q |
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| T |
8101687 |
gatgagtttgaagacaagatgaaggagcttgagacaatctgtaacccaatcattgcaaagatgtaccaaggtg |
8101615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 17706804 - 17706893
Alignment:
| Q |
13 |
atcatcttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
102 |
Q |
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| T |
17706804 |
atcagcttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
17706893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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