View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4322_high_4 (Length: 273)
Name: NF4322_high_4
Description: NF4322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4322_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 2906240 - 2905996
Alignment:
| Q |
20 |
attcggcacagttgtggaggtgggagatgaatttggtggcggcagcgaggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaa |
119 |
Q |
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| T |
2906240 |
attcggcacagttgtggaggtgggagatgaatttggtggcggcagcgaggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaa |
2906141 |
T |
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| Q |
120 |
gaacaagacataccacaaacattgataacggttgaacattagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgat |
219 |
Q |
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| T |
2906140 |
gaacaagacataccacaaacattgataacggttgaacactagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgat |
2906041 |
T |
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| Q |
220 |
atgtatatgatattggagtctaatacacacaagtgatgatgatgt |
264 |
Q |
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| T |
2906040 |
atgtatatgatattggagtctaatacacacaagtgatgatgatgt |
2905996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 24 - 264
Target Start/End: Complemental strand, 2854208 - 2853968
Alignment:
| Q |
24 |
ggcacagttgtggaggtgggagatgaatttggtggcggcagcgaggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaac |
123 |
Q |
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| T |
2854208 |
ggcacagttgtggagatgggagatgaatttggtggcggcagcgaggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaac |
2854109 |
T |
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| Q |
124 |
aagacataccacaaacattgataacggttgaacattagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgt |
223 |
Q |
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| T |
2854108 |
aagacataccacaaacattgataacggttgaacactagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgt |
2854009 |
T |
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| Q |
224 |
atatgatattggagtctaatacacacaagtgatgatgatgt |
264 |
Q |
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| T |
2854008 |
atatgatattggagtctaatacacacaagtgatgatgatgt |
2853968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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