View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4322_low_1 (Length: 345)
Name: NF4322_low_1
Description: NF4322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4322_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 28858894 - 28859205
Alignment:
| Q |
16 |
cagattataattgtaactgacatatgtatgatatattctttcgacgatcatctctgcaagtacacaggttatccatactagttatattacacacaggata |
115 |
Q |
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| T |
28858894 |
cagattataattgtaactgacatatgtatgatatattctttcgacgatcatctctgcaagtacacaggttatccatactagttatattacacacaggata |
28858993 |
T |
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| Q |
116 |
tgtagtctgtttaagcaagactttgcaggaaaaattacgagtttgaagacattgtattttgttcaatacattgatggtactaattaatataaactcagaa |
215 |
Q |
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| T |
28858994 |
tgtagtctgtttaagcaagactttgcaggaaaaattacgagtttgaagacattgtattttgttcaatacattgatggtactaattaatataaactcagaa |
28859093 |
T |
|
| Q |
216 |
tctaacgaggatatggatcagtaaatgaagcctcatttactgattctggagctgatttacttgtggattgacttgatcttgttgtccctgacttctcttc |
315 |
Q |
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| T |
28859094 |
tctaacgaggatatggatcagtaaatgaagcctcatttactgattctggagctgatttacttgtggattgacttgatcttgttgtccctgacttctcttc |
28859193 |
T |
|
| Q |
316 |
ccacagcctcat |
327 |
Q |
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| T |
28859194 |
ccacagcctcat |
28859205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 28843373 - 28843684
Alignment:
| Q |
16 |
cagattataattgtaactgacatatgtatgatatattctttcgacgatcatctctgcaag---tacacaggttatccatactagttatattacacacagg |
112 |
Q |
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| T |
28843373 |
cagattataattataactgacatatatatgatatattctttccatgattatctcttcatgtgctacaaaggttctcaataccagttatattacaaattgg |
28843472 |
T |
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| Q |
113 |
atatgtagtctgtttaagcaagactttgcaggaa-aaattacgagtttgaagacattgtattttgttcaatacattgatggtactaattaatataaact- |
210 |
Q |
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| T |
28843473 |
atatgcagtctgtttatgcaagactttgcaggaacaaattatgtgttccatgacattgtattttgttcaaaacattgatggt-gtaattaatataaacta |
28843571 |
T |
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| Q |
211 |
---cagaatctaacgaggatatggatcagtaaatgaagcctcatttactgattctggagctgatttacttgtggattgacttgatcttgttgtccctgac |
307 |
Q |
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| T |
28843572 |
agctagaatctaacgaggatatggatcagtaaatgaagcctcgtttactgatactggagctgatttagttgtagattgacttgatctcgttgtccctgaa |
28843671 |
T |
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| Q |
308 |
ttctcttcccaca |
320 |
Q |
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| T |
28843672 |
ttctcttcgcaca |
28843684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 28874242 - 28874405
Alignment:
| Q |
49 |
tattctttcgacgatcatctctgcaagt---acacaggttatccatactagttatattacacacaggatatgtagtctgtttaagcaagactttgcagga |
145 |
Q |
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| T |
28874242 |
tattctttcaacgatcatctctccaagtgttacacaggttctccatactagttatattacaaacagaatatggagtctgtttaagcaa---ttcgcagga |
28874338 |
T |
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| Q |
146 |
aaaa-ttacgagtttgaagacattgtattttgttcaatacattgatggtactaattaatataaactc |
211 |
Q |
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| T |
28874339 |
aaaaattatgagttcgaagacattgtattttgttcaaaacattgatggtactaattaacataaactc |
28874405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 28826613 - 28826696
Alignment:
| Q |
183 |
acattgatggtactaattaatataaactca------gaatctaacgaggatatggatcagtaaatgaagcctcatttactgatt |
260 |
Q |
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| T |
28826613 |
acattgatggtactaattaatataaactcatggctagaatctaacgaggatatggctcagtaaatgaagcctcatttactgatt |
28826696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 6526153 - 6526101
Alignment:
| Q |
210 |
tcagaatctaacgaggatatggatcagtaaatgaagcctcatttactgattct |
262 |
Q |
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| T |
6526153 |
tcagaatctagcgaggatatggctccgtaatcgaagcctcatttactgattct |
6526101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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