View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4323-Insertion-12 (Length: 136)
Name: NF4323-Insertion-12
Description: NF4323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4323-Insertion-12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 6e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 6e-66
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 44452254 - 44452124
Alignment:
| Q |
6 |
caatggctctattgtagaagaggagacccttaaaggagagataaatatcttattctttctcaatctttcaataaattagtcttttgttttcaattaaaat |
105 |
Q |
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| T |
44452254 |
caatggctctattgtagaagaggagacccttaaaggagagataactatcttattctttctcaatctttcaataaattagtcttttgttttcaattaaaat |
44452155 |
T |
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| Q |
106 |
ttcgggttcctaacaattagtttgaccagcc |
136 |
Q |
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| T |
44452154 |
ttcgggttcctaacaattagtttgaccagcc |
44452124 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 19260297 - 19260252
Alignment:
| Q |
55 |
ttattctttctcaatctttcaataaattagtcttttgttttcaatt |
100 |
Q |
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| T |
19260297 |
ttattctttctcaatctttcaataaaatagtcctttcttttcaatt |
19260252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 39237996 - 39238036
Alignment:
| Q |
6 |
caatggctctattgtagaagaggagacccttaaaggagaga |
46 |
Q |
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| T |
39237996 |
caatggctctattgtagaaggggaaacccttaaaggagaga |
39238036 |
T |
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