View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4323-Insertion-5 (Length: 91)
Name: NF4323-Insertion-5
Description: NF4323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4323-Insertion-5 |
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| [»] chr6 (4 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 6e-40; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 6e-40
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 16570662 - 16570576
Alignment:
| Q |
5 |
cataaagtcttctagaattacaaagagtcctgatataaagtttagggaccttttcagaaacacacctgaatttctcaagctgtttgt |
91 |
Q |
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| T |
16570662 |
cataaagtcttctagaattacatagagtcctgatataaagtttagggaccttttcagaaacacacctgaatttctcaagctgtttgt |
16570576 |
T |
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Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 16579220 - 16579157
Alignment:
| Q |
28 |
agagtcctgatataaagtttagggaccttttcagaaacacacctgaatttctcaagctgtttgt |
91 |
Q |
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| T |
16579220 |
agagtcctgatataaagtttagggatcttttcggaaacacgcctgattttctcaagctgtttgt |
16579157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 16616160 - 16616223
Alignment:
| Q |
28 |
agagtcctgatataaagtttagggaccttttcagaaacacacctgaatttctcaagctgtttgt |
91 |
Q |
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| T |
16616160 |
agagtcctgatataaagtttagggatcttttcggaaacacgcctgattttctcaagctgtttgt |
16616223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 17040613 - 17040677
Alignment:
| Q |
27 |
aagagtcctgatataaagtttagggaccttttcagaaacacacctgaatttctcaagctgtttgt |
91 |
Q |
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| T |
17040613 |
aagagtcctgttgtaaagtttaggggccttttcggaaagacgcatgaatttctcaagctgtttgt |
17040677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 32790705 - 32790627
Alignment:
| Q |
12 |
tcttctagaattacaaagagtcctgatataaagtttagggaccttttcagaaacacacctgaatttctcaagctgtttgt |
91 |
Q |
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| T |
32790705 |
tcttctagcattacaa-gagtccttatgtaaagtttagggacctttacggaaccacacatgaatttctcaagctgtttgt |
32790627 |
T |
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