View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4323_high_1 (Length: 580)
Name: NF4323_high_1
Description: NF4323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4323_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Original strand, 7639435 - 7639980
Alignment:
| Q |
18 |
tgttgtactagtgtcttaagttttcagaggatactattcatcttcttccttcatttcaaaatttgacacatctgtttctgagggctaacactttcactag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7639435 |
tgttgtactagtgtcttaagttttcagaggatactattcagcttcttccttcatttcaaaatttgacacttctgtttctgagggctaacactttcactag |
7639534 |
T |
|
| Q |
118 |
tgaagtagtaatggacattctcctaaagactcctaatctgaaagctcttcattttcatacggtacatcttacatcatgcttcactactattgcattgtgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| || |
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| T |
7639535 |
tgaagtagtaatggacattctcctaaagactcctaatctgaaagctcttcattttcacgtggtaaatcttacatcatgcttcactactattgcattgcgt |
7639634 |
T |
|
| Q |
218 |
accatgttttgaggttaagaaatacta--atattacttatgtccattgacttgtttattaatttatttttatgtagggatctgtgtcgttcatacatctt |
315 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7639635 |
accatgttttgaggttaagaaatactataatattacttatgtccattgacttgttcattaatttatttttatgtagggatctgtgtcattcatacatctt |
7639734 |
T |
|
| Q |
316 |
gaagacgactggccattactttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtggacttgaacaacatatccaat |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7639735 |
gaagacgactggccattactttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtggacttgaacaacatatccaat |
7639834 |
T |
|
| Q |
416 |
ttattaattttgttttaaaaaatgccaaagttttagaagagatccggatagtgtgttcgagtgatataacaacttatctcgataatatcagaagccagtt |
515 |
Q |
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| T |
7639835 |
ttattaattttgttttaaaaaatgccaaagttttagaagagatccggatagtgtgttcgagtgatataacaacttatctcgataatatcagaagccagtt |
7639934 |
T |
|
| Q |
516 |
gcaagctgtatgccccgaaagctgtctcatgacatttcagtagaca |
561 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7639935 |
gcaagctgtatgccccgaaagctgtctcatgacatttcagtagaca |
7639980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 23 - 561
Target Start/End: Original strand, 7632744 - 7633263
Alignment:
| Q |
23 |
tactagtgtcttaagttttcagaggatactattcatcttcttccttcatttcaaaatttgacacatctgtttctgagggctaacactttcactagtgaag |
122 |
Q |
| |
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||||||| |||| ||| |||| |||| ||| | |||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
7632744 |
tactagtatcttgagtattcaaaggagactctccatcatcttccttcatttcaaaatttgacacatctgcttctgaggactaacactttcactagtgaag |
7632843 |
T |
|
| Q |
123 |
tagtaatggacattctcctaaagactcctaatctgaaagctcttcattttcatacggtacatcttacatcatgcttcactactattgcattgtgtaccat |
222 |
Q |
| |
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|||||| || |||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||| | | || ||||| |
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| T |
7632844 |
tagtaacgggcattcttctaaagactcctaatctgaaagctcttcatattcatacggtacatcttcaatcatgcttaacctctattata-tatgaaccat |
7632942 |
T |
|
| Q |
223 |
gttttgaggttaagaaatactaatattacttatgtccattgacttgtttattaatttatttttatgtagggatctgtgtcgttcatacatcttgaagacg |
322 |
Q |
| |
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|||| ||| | ||| |||||||||||||||||||| |||||||||| ||||| ||| || ||| ||||| |||||||||||| |
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| T |
7632943 |
gtttcaaggat----------------actcatgtccattgacttgtttat--atttatttttctgtagcgatttgagtcattcatggatcttgaagacg |
7633024 |
T |
|
| Q |
323 |
actggccattactttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtggacttgaacaacatatccaatttattaa |
422 |
Q |
| |
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||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
7633025 |
actggacattactttcagtgccttactgtttcgaatattctctcaaatcattttgcgtttcagattttcttggacttgaacaacatatccaatttattaa |
7633124 |
T |
|
| Q |
423 |
ttttgttttaaaaaatgccaaagttttagaagagatccggatagtgtgttcgagtgatataacaacttatctcgataatatcagaagccagttgcaagct |
522 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||| |||| ||| |||||||||| |||||||||| ||||| |
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| T |
7633125 |
gtttgttttaaaaaatgccagagttttagaagagatccggatagtgtgttcgagcgacatattaactgatcgagataatatcaaaagccagttggaagct |
7633224 |
T |
|
| Q |
523 |
gtatgccccgaaagctgtctcatgacatttcagtagaca |
561 |
Q |
| |
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||| |||| ||||||||||||||||||||| ||||||| |
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| T |
7633225 |
gtagtccccaaaagctgtctcatgacatttctgtagaca |
7633263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 31268050 - 31267996
Alignment:
| Q |
112 |
cactagtgaagtagtaatggacattctcctaaagactcctaatctgaaagctctt |
166 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||| ||| ||| |||| |
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| T |
31268050 |
cactagtgaagtactaatggacattctccgaaagactcctaaactggaagttctt |
31267996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 396
Target Start/End: Complemental strand, 31217585 - 31217525
Alignment:
| Q |
336 |
ttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtgga |
396 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||| | ||||||||||||||||| |
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| T |
31217585 |
ttcactgccttgctgtttcaaatcttctctcaaatcatgtgatatttcagattttcgtgga |
31217525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 368
Target Start/End: Complemental strand, 31267847 - 31267815
Alignment:
| Q |
336 |
ttcagtgccttgctgtttcaaatattctctcaa |
368 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |
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|
| T |
31267847 |
ttcagtgccttgctgtttcaaatcttctctcaa |
31267815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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