View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4324-Insertion-10 (Length: 110)
Name: NF4324-Insertion-10
Description: NF4324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4324-Insertion-10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 9e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 9e-52
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 563571 - 563673
Alignment:
| Q |
8 |
acatagccatattattttgaactcctctgagacaaagtttcctgcgactcacaattgcaacaccaaaaatgacagtgatggttcaattatgttatttggt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
563571 |
acatagccatattattttgaactcctctgagacaaagtttcctgcgactcacaattgcaacaccaaaaatgacagtgatggttcaattatgttatttggt |
563670 |
T |
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| Q |
108 |
aag |
110 |
Q |
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||| |
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| T |
563671 |
aag |
563673 |
T |
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Target: chr2; HSP #2
Raw Score: 99; E-Value: 2e-49
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 513566 - 513464
Alignment:
| Q |
8 |
acatagccatattattttgaactcctctgagacaaagtttcctgcgactcacaattgcaacaccaaaaatgacagtgatggttcaattatgttatttggt |
107 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
513566 |
acatagccatattattttgaactcctctgaaacaaagtttcctgcgactcacaattgcaacaccaaaaatgacagtgatggttcaattatgttatttggt |
513467 |
T |
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| Q |
108 |
aag |
110 |
Q |
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||| |
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| T |
513466 |
aag |
513464 |
T |
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