View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4324-Insertion-11 (Length: 70)

Name: NF4324-Insertion-11
Description: NF4324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4324-Insertion-11
NF4324-Insertion-11
[»] chr7 (1 HSPs)
chr7 (1-70)||(36067615-36067685)
[»] chr6 (4 HSPs)
chr6 (1-70)||(17732571-17732641)
chr6 (1-70)||(6009184-6009254)
chr6 (1-54)||(30709793-30709846)
chr6 (1-70)||(15347725-15347795)
[»] chr3 (3 HSPs)
chr3 (1-70)||(50838014-50838084)
chr3 (1-70)||(54560326-54560396)
chr3 (1-54)||(47470994-47471046)
[»] chr1 (1 HSPs)
chr1 (1-70)||(47445537-47445607)
[»] chr5 (2 HSPs)
chr5 (1-70)||(5348016-5348086)
chr5 (1-54)||(36429582-36429635)
[»] chr2 (3 HSPs)
chr2 (1-70)||(4592918-4592988)
chr2 (1-54)||(10255973-10256026)
chr2 (16-54)||(10256012-10256050)
[»] chr4 (1 HSPs)
chr4 (1-54)||(27455220-27455273)
[»] scaffold0102 (1 HSPs)
scaffold0102 (1-70)||(32652-32722)
[»] chr8 (3 HSPs)
chr8 (1-70)||(14790970-14791040)
chr8 (1-54)||(20112059-20112112)
chr8 (1-42)||(18308868-18308909)


Alignment Details
Target: chr7 (Bit Score: 55; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 36067615 - 36067685
Alignment:
Q  1 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaa 70  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||    
T  36067615 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaa 36067685  T

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Target: chr6 (Bit Score: 55; Significance: 2e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 17732641 - 17732571
Alignment:
Q  1 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaa 70  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||    
T  17732641 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaa 17732571  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-21
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 6009254 - 6009184
Alignment:
Q  1 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaa 70  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||  | |||||||||||||    
T  6009254 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataacagaaa 6009184  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30709793 - 30709846
Alignment:
Q  1 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac 54  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30709793 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaac 30709846  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 15347725 - 15347795
Alignment:
Q  1 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaa 70  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||  ||||||||||||    
T  15347725 gtttgttaccttcttaaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaa 15347795  T

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Target: chr3 (Bit Score: 55; Significance: 2e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 50838084 - 50838014
Alignment:
Q  1 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaa 70  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||    
T  50838084 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaa 50838014  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 54560326 - 54560396
Alignment:
Q  1 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaa 70  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||  ||||||||||||    
T  54560326 gtttgttaccttcttgaattaatcaactacaaccctttggaattcatcaacaacagaaagaataacagaaa 54560396  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 47470994 - 47471046
Alignment:
Q  1 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac 54  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47470994 gtttgttaccttcttgaattaatcaacaacaaccctttggaa-tcatcaacaac 47471046  T

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Target: chr1 (Bit Score: 55; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 47445607 - 47445537
Alignment:
Q  1 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaa 70  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||    
T  47445607 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaa 47445537  T

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Target: chr5 (Bit Score: 51; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-21
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 5348016 - 5348086
Alignment:
Q  1 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaa 70  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  ||||||||||||    
T  5348016 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaa 5348086  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 36429582 - 36429635
Alignment:
Q  1 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac 54  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  36429582 gtttgttaccttcttgaattaatcaacaacaaccttttggaattcatcaacaac 36429635  T

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Target: chr2 (Bit Score: 51; Significance: 6e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-21
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 4592918 - 4592988
Alignment:
Q  1 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaa 70  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  ||||||||||||    
T  4592918 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaa 4592988  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10255973 - 10256026
Alignment:
Q  1 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac 54  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10255973 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaac 10256026  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 10256012 - 10256050
Alignment:
Q  16 gaattaatcaacaacaaccctttggaactcatcaacaac 54  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  10256012 gaattcatcaacaacaaccctttggaattcatcaacaac 10256050  T

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Target: chr4 (Bit Score: 50; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27455220 - 27455273
Alignment:
Q  1 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac 54  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27455220 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaac 27455273  T

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Target: scaffold0102 (Bit Score: 47; Significance: 1e-18; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 32652 - 32722
Alignment:
Q  1 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaa 70  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||||| |||||    
T  32652 gtttgttaccttcttgaattaatcaacaacaaccctttgaaattcatcaacaacagaatgaataatagaaa 32722  T

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Target: chr8 (Bit Score: 47; Significance: 1e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 14790970 - 14791040
Alignment:
Q  1 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaa 70  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||  ||||||||||||    
T  14790970 gtttgttaccttcttcaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaa 14791040  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 20112112 - 20112059
Alignment:
Q  1 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac 54  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  20112112 gtttgttaccttcttgaattaatcaacagcaaccctttggaattcatcaacaac 20112059  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18308868 - 18308909
Alignment:
Q  1 gtttgttaccttcttgaattaatcaacaacaaccctttggaa 42  Q
    |||||||||| |||||||||||||||||||||| ||||||||    
T  18308868 gtttgttaccatcttgaattaatcaacaacaactctttggaa 18308909  T

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