View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4324-Insertion-16 (Length: 169)

Name: NF4324-Insertion-16
Description: NF4324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4324-Insertion-16
NF4324-Insertion-16
[»] chr6 (9 HSPs)
chr6 (1-169)||(11170342-11170510)
chr6 (1-169)||(11209164-11209332)
chr6 (1-169)||(11275726-11275894)
chr6 (1-81)||(11315049-11315129)
chr6 (4-81)||(11160912-11160989)
chr6 (4-81)||(11199488-11199565)
chr6 (1-81)||(11196495-11196575)
chr6 (4-81)||(11156045-11156122)
chr6 (4-81)||(11241739-11241816)
[»] scaffold1207 (1 HSPs)
scaffold1207 (1-106)||(660-765)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 1e-76; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 1e-76
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 11170342 - 11170510
Alignment:
Q  1 ccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgc 100  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  11170342 ccgccaacaagcacaacatcatgaattttactcttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagactcttac 11170441  T
Q  101 tgagattgtcgaaaagtccacgactaatccctgaggagaaatcttcacctttatataaacaatctatct 169  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11170442 tgagattgtcgaaaattccacgactaatcactgaggagaaatcttcacctttatataaacaatctatct 11170510  T

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Target: chr6; HSP #2
Raw Score: 97; E-Value: 6e-48
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 11209164 - 11209332
Alignment:
Q  1 ccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgc 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||     
T  11209164 ccgccaacaagcacaacatcatgaatgttactcttcactatcccactatcttctatacacttttctacaatctccatgcactggtcaaaaagactcttgt 11209263  T
Q  101 tgagattgtcgaaaagtccacgactaatccctgaggagaaatcttcacctttatataaacaatctatct 169  Q
    |||||| ||||||   | |||||||||||  |||  | ||||||| ||||| || ||||||||||||||    
T  11209264 tgagatcgtcgaactttgcacgactaatcgttgacaaaaaatctttaccttcatttaaacaatctatct 11209332  T

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Target: chr6; HSP #3
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 11275726 - 11275894
Alignment:
Q  1 ccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgc 100  Q
    |||||||||||||||||||||||||||||||| ||   ||||||||||||| ||||||||||||||||| | ||||||||| ||| ||||||| |||||     
T  11275726 ccgccaacaagcacaacatcatgaatgttactcttgtttatcccactatctgctatacacttttctacaatttccatgcactggtaaaaaagactcttgt 11275825  T
Q  101 tgagattgtcgaaaagtccacgactaatccctgaggagaaatcttcacctttatataaacaatctatct 169  Q
    ||||||  |||||   | |||||||||||   ||||||||||||  |||||  | |||||| |||||||    
T  11275826 tgagatcatcgaactttgcacgactaatcaacgaggagaaatctgtaccttggtttaaacattctatct 11275894  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 11315129 - 11315049
Alignment:
Q  1 ccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 81  Q
    |||||||||||||||||||||||||||| ||| || || ||||||||||| |||| ||||||||||||| ||| |||||||    
T  11315129 ccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatcttcatgcac 11315049  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 11160912 - 11160989
Alignment:
Q  4 ccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 81  Q
    |||||||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||||||| |||||||||||    
T  11160912 ccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttctacaatctccatgcac 11160989  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 11199488 - 11199565
Alignment:
Q  4 ccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 81  Q
    |||||||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||||||| |||||||||||    
T  11199488 ccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttctacaatctccatgcac 11199565  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 11196495 - 11196575
Alignment:
Q  1 ccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 81  Q
    ||||||||||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||| ||| |||||||||||    
T  11196495 ccgccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgcac 11196575  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 11156045 - 11156122
Alignment:
Q  4 ccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 81  Q
    |||||||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||| ||| |||||||||||    
T  11156045 ccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgcac 11156122  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 11241816 - 11241739
Alignment:
Q  4 ccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 81  Q
    |||||||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||| ||| |||||||||||    
T  11241816 ccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgcac 11241739  T

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Target: scaffold1207 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 660 - 765
Alignment:
Q  1 ccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgc 100  Q
    ||||||||||| ||||||||||||| |||||| ||   ||||||||||||| ||||||| ||||||||||||||||||||| ||| ||||||| |||||     
T  660 ccgccaacaaggacaacatcatgaaagttactcttgtttatcccactatctgctatacagttttctacactctccatgcactggttaaaaagactcttgt 759  T
Q  101 tgagat 106  Q
    ||||||    
T  760 tgagat 765  T

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