View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4324-Insertion-18 (Length: 196)
Name: NF4324-Insertion-18
Description: NF4324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4324-Insertion-18 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 23348652 - 23348463
Alignment:
| Q |
1 |
tgaacaagtcatgttagcactttaaatcaattatcaaaccctaaaagcaatcatggttcagaatcaacgtttgaatcagtattccaaattggtttcgaat |
100 |
Q |
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| T |
23348652 |
tgaacaagtcacgttagcactttaaatcaattatcaaaccctaaaagcaatcatggttcagaatcaacgtttgaatcagtattccaaattggtttcgaat |
23348553 |
T |
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| Q |
101 |
gatatccaatccaataaaataaaaaccgattaagcagaag-caaaaatagaaatcccatgagtggttttaa-tttgaaaccaaatcaaaa |
188 |
Q |
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| T |
23348552 |
gatatccaatctaataaaataaaaaccgattaatcagaagccaaaaatagaaatcccatgagtggttttaattttgaaaccaaatcaaaa |
23348463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 44 - 196
Target Start/End: Complemental strand, 11233199 - 11233050
Alignment:
| Q |
44 |
aaagcaatcatggttcagaatcaacgtttgaatcagtattccaaattggtttcgaatgatatccaatccaataaaataaaaaccgattaagcagaagcaa |
143 |
Q |
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|||| |||||||| |||||||||||| |||| |||||||| ||||||||| ||||||||||||||| ||||| |||||| ||||| ||||||||| |
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| T |
11233199 |
aaagtaatcatgggtcagaatcaacgcttgactcagtatttcaaattggtgtcgaatgatatccaac-----aaaattaaaaccaattaatcagaagcaa |
11233105 |
T |
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| Q |
144 |
aaatagaa-atcccatgagtggttttaattt-gaaaccaaatcaaaatcacatat |
196 |
Q |
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| T |
11233104 |
aaattaaagatcccatgagtggttttaatttggaaactaaatcaaaggcacatat |
11233050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 44 - 196
Target Start/End: Complemental strand, 40934202 - 40934053
Alignment:
| Q |
44 |
aaagcaatcatggttcagaatcaacgtttgaatcagtattccaaattggtttcgaatgatatccaatccaataaaataaaaaccgattaagcagaagcaa |
143 |
Q |
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|||| |||||||| |||||||||||| |||| |||||||| ||||||||| ||||||||||||||| ||||| |||||| ||||| ||||||||| |
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| T |
40934202 |
aaagtaatcatgggtcagaatcaacgcttgactcagtatttcaaattggtgtcgaatgatatccaac-----aaaattaaaaccaattaatcagaagcaa |
40934108 |
T |
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| Q |
144 |
aaatagaa-atcccatgagtggttttaattt-gaaaccaaatcaaaatcacatat |
196 |
Q |
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|||| || |||||||||||||||||||||| ||||| |||||||| ||||||| |
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| T |
40934107 |
aaattaaagatcccatgagtggttttaatttggaaactaaatcaaaggcacatat |
40934053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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