View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4324-Insertion-31 (Length: 193)

Name: NF4324-Insertion-31
Description: NF4324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4324-Insertion-31
NF4324-Insertion-31
[»] chr4 (3 HSPs)
chr4 (3-193)||(20363742-20363931)
chr4 (109-185)||(20371496-20371570)
chr4 (3-44)||(20371625-20371666)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 20363931 - 20363742
Alignment:
Q  3 agaaagtgaatattccaaacatgcaacagaacaccatacagtcgcaaccaagctcctctttcataaacattatcatccttcgatatccacacacgcatct 102  Q
    |||||||||||||||||||||||||||| || || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  20363931 agaaagtgaatattccaaacatgcaacataatac-atacagtcgtaaccaagctcctctttcataaacattatcatccttcgatatccacacacgcacct 20363833  T
Q  103 caaataacatgtcttctttttccataacaaatcagaaacacagtgtctcccctcattggtatcacacgaacatgttgaaatctagcatcaa 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20363832 caaataacatgtcttctttttccataacaaatcagaaacacagtgtctcccctcattggtatcacacgaacatgttgaaatctagcatcaa 20363742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 20371570 - 20371496
Alignment:
Q  109 acatgtcttctttttccataacaaatcagaaacacagtgtctcccctcattggtatcacacgaacatgttgaaatct 185  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||  |||||||||  | |||||||||||||||    
T  20371570 acatatcttgtttttccataacaaatcagaaacacaatgtctcccct--ttggtatcatgcaaacatgttgaaatct 20371496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 20371666 - 20371625
Alignment:
Q  3 agaaagtgaatattccaaacatgcaacagaacaccatacagt 44  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20371666 agaaagtgaatattccaaacatgcaacagaacaccatacagt 20371625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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