View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4324_high_5 (Length: 272)
Name: NF4324_high_5
Description: NF4324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4324_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 3851564 - 3851307
Alignment:
| Q |
1 |
aaaagaacaaaaaagaggtaaaagttacatatatttcaagtcctatgaaagtgaagactagtgcttcaaattttagagcacttgtgcaagagctcacagg |
100 |
Q |
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| T |
3851564 |
aaaagaacaaaaaagaggtaaaagttacatatatttcaagtcctatgaaagtgaagactagtgcttcaaattttagagcacttgtgcaagagctcacagg |
3851465 |
T |
|
| Q |
101 |
tcaagactcaaatgttgctgatatgtttgtggaagttaatgattttgttcatgttgatgatgttcaaaatcaacnnnnnnnttcaattcaacaatggagt |
200 |
Q |
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| T |
3851464 |
tcaagactcaaatgttgctgatatgtttgtggaagttaatgattttgttcatgttgatgatgttcaaaatcaacaaaaaaattcaattgaacaatggagt |
3851365 |
T |
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| Q |
201 |
agtgataataattctagtgaaggttttatgcctgattactctacttggatgaaacttg |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3851364 |
agtgataataattctagtgaaggttttatgcctgattactctacttggatgaaacttg |
3851307 |
T |
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Back To:
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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 14917386 - 14917486
Alignment:
| Q |
21 |
aaagttacatatatttcaagtcctatgaaagtgaagactagtgcttcaaattttagagcacttgtgcaagagctcacaggtcaagactcaaatgttgctg |
120 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| || |||||||| || || || |||||||| |||||||||| |
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| T |
14917386 |
aaagttacatatatttcaagtccagtgaaagtgaagactaatgcttcaaatttcagagccctagtgcaagaactaactggccaagactccaatgttgctg |
14917485 |
T |
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| Q |
121 |
a |
121 |
Q |
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| |
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| T |
14917486 |
a |
14917486 |
T |
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