View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4324_high_6 (Length: 242)
Name: NF4324_high_6
Description: NF4324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4324_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 51730907 - 51730691
Alignment:
| Q |
15 |
acacttacatcaacaagtaccgcatgtaaagcatcaaaatgaacgggacaatacgaatgcaatcctaacagggctttaggaggaattcggaattcatgga |
114 |
Q |
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| T |
51730907 |
acacttacatcaacaagtaccgcatgtaaagcatcaaaatgaacgggacaatacgaatgcaatcctaacagagctttaggaggaattcggaattcatgga |
51730808 |
T |
|
| Q |
115 |
tagcagccggagaagcatccagatcatccctgtggaatgtaagctccagtcagcgttacattttcaccaagcaaatgccaactaaaaaggaattaagcag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51730807 |
tagcagccggagaagcatccagatcatccctgtggaatgtaagctccagtcagctttacattttcaccaagcaaatgccaactaaaaaggaattaagcag |
51730708 |
T |
|
| Q |
215 |
gtttgtggatcatatga |
231 |
Q |
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||||||||||||||||| |
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| T |
51730707 |
gtttgtggatcatatga |
51730691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 353761 - 353655
Alignment:
| Q |
15 |
acacttacatcaacaagtaccgcatgtaaagcatcaaaatgaacgggacaatacgaatgcaatcctaacagggctttaggaggaattcggaattcatgga |
114 |
Q |
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||||| ||||||||||| | ||||| |||||||||||||| || |||||||| ||||||| |||||| || ||||| ||||||||||| |||||||||| |
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| T |
353761 |
acactgacatcaacaagagcagcatggaaagcatcaaaatgtacaggacaatatgaatgcagtcctaaaagagctttgggaggaattcgaaattcatgga |
353662 |
T |
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| Q |
115 |
tagcagc |
121 |
Q |
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|||||| |
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| T |
353661 |
cagcagc |
353655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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