View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4324_low_12 (Length: 241)
Name: NF4324_low_12
Description: NF4324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4324_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 48159093 - 48159310
Alignment:
| Q |
21 |
ggaataaacaaatcttgtggatctaacttgattacttagcatattttcccataaagtggaagtcacatgtcatggtttcggaccttaaccaagtttgatt |
120 |
Q |
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| T |
48159093 |
ggaataaacaaatcttgtggatctaacttgattacttagcatattttcccataaagtggaagtcacatgtcatggtttcggaccttaaccaagtttgatt |
48159192 |
T |
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| Q |
121 |
ccttccgacgggccaaagtagatactacttaataaatgaccagttgaacttgaagtatgctccttccaataatttcacgtactattacatcaatcaatca |
220 |
Q |
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| T |
48159193 |
ccttccgacgggccaaagtaga---tacttaataaatgaccagttgaacttgacgtatgctccttccaataatttcacgtacaattacatcaatcaatca |
48159289 |
T |
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| Q |
221 |
aataataacaactaaaacacc |
241 |
Q |
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| T |
48159290 |
aataataacaactaaaacacc |
48159310 |
T |
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