View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4324_low_2 (Length: 1148)
Name: NF4324_low_2
Description: NF4324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4324_low_2 |
 | |
|
| [»] scaffold1297 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 1080; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1080; E-Value: 0
Query Start/End: Original strand, 8 - 1131
Target Start/End: Original strand, 8316055 - 8317178
Alignment:
| Q |
8 |
cagacacgatatggacattactgataatatgatataacgcctgaacattcctaatacaggagtttatcttgtagaacataatatgcaaatgatctcaaga |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8316055 |
cagacacgacatggacattactgataatatgatataaagcctgaacattcctaatacatgagtttatcttgtagaacataatatgcaaatgatctcaaga |
8316154 |
T |
|
| Q |
108 |
tatgtaatttaagtttcaaagataccaaggaggacttatactaactggtattgaaattgcagtaagtaacatggaggctggttcaagtaaggttcacaag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8316155 |
tatgtaatttaagtttcaaagataccaaggaggacttatactaactggtattgaaattgcagtaagtaacatggaggctggttcaagtaaggttcacaag |
8316254 |
T |
|
| Q |
208 |
agtactcaaatggcaagtgtaattgaagaagacacgatcaacagcaagctacctgaatcacttataaatcgcgttctgtctttcctccctacaaaagatg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8316255 |
agtactcaaatggcaagtgtaattgaagaagacacgatcaacagcaagctacctgaatcacttataaatcgcgttctgtctttcctccctacaaaagatg |
8316354 |
T |
|
| Q |
308 |
ttgttcggacttgtgcgttgtccaagagctggatgaatcgatggacatcatccattaccaagctcgacttagatgatattgatttatcatacaattataa |
407 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8316355 |
ttgttcggacttgtgtgttgtccaagagatggatgaatcgatggacatcatccatcaccaagctcgacttagatgatattgatttatcatacaattataa |
8316454 |
T |
|
| Q |
408 |
tccattgtgttcttattgtgaagaaatttgcactgattattgctatgactatgataaggttagttttctccctcttgttatcttatttgatagtccaccc |
507 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8316455 |
tccattgtgttcttattgcgaagaaatttgcactgattattgctatgactatgataaggttagttttctccctcttgttatcttatttgatagtccaccc |
8316554 |
T |
|
| Q |
508 |
caaaacattgatgataaattaagtaactctgatgattttggatgcagtataaattgactgtatgtccaaggtgtcatgtttgcggcaatcataaagccaa |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8316555 |
caaaacattgatgataaattaagtaactctgatgattttggatgcagtataaattgactgtatgtccaaggtgtcatgtttgcggaaatcataaagccaa |
8316654 |
T |
|
| Q |
608 |
tttgcgcgatgcagaagtatatgaaaggcgtgtggagatagattttgagagcgggatgaaaatagaatcaggtaaaaaggagcagcagtttgtaaatttt |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8316655 |
tttgcgcgatgcagaagtatatgaaaggcgtgtggagatagattttgagagcgggatgaaaatagaatcaggtaaaaaggagcagcagtttgtaaatttt |
8316754 |
T |
|
| Q |
708 |
gttggcagagcacttctccttacttcaatctcaagcatggagttggaaagattttctttactgatcaataacaagcgtgatatatcccttcaaaatactt |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8316755 |
gttggcagagcacttctccttacttcaatctcaagcatggagttggaaagattttctttactgatcaataacaagcgtgatatatcccttcaaaatactt |
8316854 |
T |
|
| Q |
808 |
ggatctctagcatcttgaatcggagagtaaaaattcttcggatccattcatctttttatcagctcctcttttctgctcttacatctcattatcttttcaa |
907 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8316855 |
ggatctctagcatcttgaatcggagagtaaaaattcttcggatccattcatctttttatcagctccccttttctgctcttacatctcattatcttttcaa |
8316954 |
T |
|
| Q |
908 |
ctgcacctccttagaagaattagaattggtactccatgtgttctccaccataaaatttcccagcatttctgttcattttggacacctaaaactcctcaag |
1007 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8316955 |
ctgcacctccttagaagaattagaattggtactccatgtgtcctccaccataaaatttcccagcatttctgttcattttggacacctaaaactcctcaag |
8317054 |
T |
|
| Q |
1008 |
ttgtatgggatcttttttaagattgatacctctagcgactgtttgacccttaatttaccacttcttagaaagtttgatatcaaaaactgcaattggtcgg |
1107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8317055 |
ttgtatgggatcttttttaagattgatacctctagcgactgtttgacccttaatttaccacttcttagaaagtttgatatcaaaaactgcaattggtcgg |
8317154 |
T |
|
| Q |
1108 |
gtggaaaagatcttattttagaag |
1131 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
8317155 |
gtggaaaagatcttattgtagaag |
8317178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 8359447 - 8359390
Alignment:
| Q |
284 |
tgtctttcctccctacaaaagatgttgttcggacttgtgcgttgtccaagagctggat |
341 |
Q |
| |
|
||||||| || || |||||||||| |||||| ||||||| |||||||||||| ||||| |
|
|
| T |
8359447 |
tgtctttacttccgacaaaagatgctgttcgaacttgtgtgttgtccaagagatggat |
8359390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1297 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 790 - 1124
Target Start/End: Complemental strand, 2125 - 1788
Alignment:
| Q |
790 |
tatcccttcaaaatacttggatctctagcatcttgaatc---ggagagtaaaaattcttcggatccattcatctttttatcagctcctcttttctgctct |
886 |
Q |
| |
|
|||| ||||||||||| |||||||||| |||||||||| ||||||| || | |||| |||||||||||| ||||||| | |||| ||||||| || |
|
|
| T |
2125 |
tatcacttcaaaatacatggatctctaccatcttgaataataggagagtcaagaatcttaggatccattcatatttttataaactccccttttctcctag |
2026 |
T |
|
| Q |
887 |
tacatctcattatcttttcaactgcacctccttagaagaattagaattggtactccatgtgttctccaccataaaatttcccagcatttctgttcatttt |
986 |
Q |
| |
|
||||||| ||||||||||| || | || || ||||| |||| ||| || | |||| ||| ||||||||||||||| | ||| |||||||| |
|
|
| T |
2025 |
tacatctgattatcttttcggctcttcttcattgcaagaactagagttgcggcttaaagtgtactctaccataaaatttccctctacctctcttcatttt |
1926 |
T |
|
| Q |
987 |
ggacacctaaaactcctcaagttgtatgggatcttttttaagattgatacctctagcgactgtttgacccttaatttaccacttcttagaaagtttgata |
1086 |
Q |
| |
|
||| |||||| | ||||| |||||||| |||||||| | |||||| ||||||| |||| | ||| |||||||||||| ||| | | ||||||||| | |
|
|
| T |
1925 |
caacagctaaaatttctcaacttgtatggagtcttttttgacattgatccctctagtgactctatgaaccttaatttaccgcttgtaaaaaagtttgaga |
1826 |
T |
|
| Q |
1087 |
tcaaaaactgcaattggtcgggtggaaaagatcttatt |
1124 |
Q |
| |
|
||| |||||| ||| |||| ||||||| || ||||| |
|
|
| T |
1825 |
tcagtaactgccattagtcgaatggaaaatatgttatt |
1788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 979 - 1105
Target Start/End: Complemental strand, 28111560 - 28111434
Alignment:
| Q |
979 |
ttcattttggacacctaaaactcctcaagttgtatgggatcttttttaagattgatacctctagcgactgtttgacccttaatttaccacttcttagaaa |
1078 |
Q |
| |
|
|||||||| ||| || ||| ||||||| |||||||| |||||||| | |||||| ||||||| |||| | ||| |||||||||||| ||| ||| ||| |
|
|
| T |
28111560 |
ttcattttcaacagctgaaattcctcaacttgtatggagtcttttttgacattgatccctctagtgactctatgaaccttaatttaccgcttgttaaaaa |
28111461 |
T |
|
| Q |
1079 |
gtttgatatcaaaaactgcaattggtc |
1105 |
Q |
| |
|
|||||| |||| |||||| ||||||| |
|
|
| T |
28111460 |
gtttgagatcagtaactgccattggtc |
28111434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 750 - 823
Target Start/End: Complemental strand, 28111777 - 28111704
Alignment:
| Q |
750 |
ttggaaagattttctttactgatcaataacaagcgtgatatatcccttcaaaatacttggatctctagcatctt |
823 |
Q |
| |
|
||||||| |||||||| ||||| ||||||| ||| | |||| ||||||||||| ||||||||||||||||| |
|
|
| T |
28111777 |
ttggaaaacttttcttttgtgatctataacaaacgttgtgtatcacttcaaaatacatggatctctagcatctt |
28111704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University