View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4324_low_5 (Length: 509)

Name: NF4324_low_5
Description: NF4324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4324_low_5
NF4324_low_5
[»] chr8 (1 HSPs)
chr8 (17-181)||(40207854-40208021)
[»] chr1 (2 HSPs)
chr1 (294-495)||(28719954-28720155)
chr1 (399-489)||(37996595-37996685)
[»] chr5 (6 HSPs)
chr5 (295-375)||(23940052-23940132)
chr5 (272-350)||(32429314-32429392)
chr5 (387-495)||(14308546-14308654)
chr5 (295-354)||(25614489-25614548)
chr5 (294-375)||(24004859-24004940)
chr5 (419-492)||(31262449-31262522)
[»] chr6 (11 HSPs)
chr6 (296-354)||(14438148-14438206)
chr6 (438-495)||(7820005-7820062)
chr6 (419-495)||(7815420-7815496)
chr6 (295-351)||(7872397-7872453)
chr6 (295-354)||(14435482-14435541)
chr6 (399-489)||(7818356-7818446)
chr6 (295-352)||(7819865-7819922)
chr6 (398-495)||(14435597-14435694)
chr6 (398-446)||(14438256-14438304)
chr6 (295-351)||(15399401-15399457)
chr6 (295-351)||(15411188-15411244)
[»] scaffold1377 (1 HSPs)
scaffold1377 (398-495)||(1347-1444)
[»] scaffold1089 (1 HSPs)
scaffold1089 (295-353)||(514-572)
[»] chr3 (2 HSPs)
chr3 (420-489)||(2467550-2467619)
chr3 (300-371)||(43684389-43684461)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 40207854 - 40208021
Alignment:
Q  17 agaaatccaacaagatctactgatgaatcagcattatgttcaccccttgtatacaatattgacatatcatagatcatatagagtaacaagcaatcaaata 116  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40207854 agaaatccaacaacatctactgatgaatcagcattatgttcaccccttgtatacaatattgacatatcatagatcatatagagtaacaagcaatcaaata 40207953  T
Q  117 actgacaataggacgataaattcaa---gaagaaatggaactttgaacaatattaactttcaatgcaa 181  Q
    |||||||||||||||||||||||||   | |||||||||||||||||||||||| |||||||||||||    
T  40207954 actgacaataggacgataaattcaagctgcagaaatggaactttgaacaatattcactttcaatgcaa 40208021  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 294 - 495
Target Start/End: Original strand, 28719954 - 28720155
Alignment:
Q  294 aaaatgaaagtttacatccggaagacatccttggagaagaggataattcttctataatttgctgtttttgcattccatttgagacgcgagcattaatgtt 393  Q
    |||||| ||||||||||||   ||||||| ||||| ||  ||||| ||||||||| ||||  || ||||||||| ||||||||  || || | |||  |     
T  28719954 aaaatgtaagtttacatccttgagacatctttggacaactggatagttcttctattatttcatgcttttgcatttcatttgaggagctagtagtaacctc 28720053  T
Q  394 gatggtcatgtcttgtaaaagcatggcattctgcaaaatataggttgcaaatcgcatatcattttccaagccttcaaaatttgaaatagtacatgacctg 493  Q
     || ||||| |||||||||||  | |||||||||| ||||||  |||||||||| | |||||||||| |||||||||||||| |||||||||||||||||    
T  28720054 aattgtcatttcttgtaaaagtctcgcattctgcagaatatactttgcaaatcggagatcattttccgagccttcaaaatttaaaatagtacatgacctg 28720153  T
Q  494 ag 495  Q
    ||    
T  28720154 ag 28720155  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 489
Target Start/End: Original strand, 37996595 - 37996685
Alignment:
Q  399 tcatgtcttgtaaaagcatggcattctgcaaaatataggttgcaaatcgcatatcattttccaagccttcaaaatttgaaatagtacatga 489  Q
    ||||||||||||||||  | ||||| |||||||||||  |||||||||| | |||||   || |||||||||| ||| |||||||||||||    
T  37996595 tcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatga 37996685  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 295 - 375
Target Start/End: Original strand, 23940052 - 23940132
Alignment:
Q  295 aaatgaaagtttacatccggaagacatccttggagaagaggataattcttctataatttgctgtttttgcattccatttga 375  Q
    |||||||||||| ||| | | ||||||||||||| | |||||||||||||||||||||||  | ||||||||| |||||||    
T  23940052 aaatgaaagtttgcattcaggagacatccttggacaggaggataattcttctataatttgaagcttttgcatttcatttga 23940132  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 32429314 - 32429392
Alignment:
Q  272 atatctagtaactaggtaaactaaaatgaaagtttacatccggaagacatccttggagaagaggataattcttctataa 350  Q
    ||||||||| ||||  |||| ||||| |||||||||||||| | ||||||||||||| ||||||| || ||||||||||    
T  32429314 atatctagttactaaataaattaaaacgaaagtttacatcccggagacatccttggacaagaggacaactcttctataa 32429392  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 495
Target Start/End: Complemental strand, 14308654 - 14308546
Alignment:
Q  387 taatgttgatggtcatgtcttgtaaaagcatggcattctgcaaaatataggttgcaaatcgcatatcattttccaagccttcaaaatttgaaatagtaca 486  Q
    |||||||||| ||||||||||| ||| |  | || |||||||||||||| ||||||||||| | ||||||| |  ||| || ||| ||| ||||||||||    
T  14308654 taatgttgattgtcatgtcttgcaaacgtcttgcgttctgcaaaatatatgttgcaaatcgaagatcatttccatagcattgaaagtttaaaatagtaca 14308555  T
Q  487 tgacctgag 495  Q
    ||| |||||    
T  14308554 tgatctgag 14308546  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 25614548 - 25614489
Alignment:
Q  295 aaatgaaagtttacatccggaagacatccttggagaagaggataattcttctataatttg 354  Q
    |||||| ||||||||||| | ||| ||||||||| | |||||||| ||||||||||||||    
T  25614548 aaatgatagtttacatcccggagaaatccttggacatgaggataactcttctataatttg 25614489  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 24004859 - 24004940
Alignment:
Q  294 aaaatgaaagtttacatccggaagacatccttggagaagaggataattcttctataatttgctgtttttgcattccatttga 375  Q
    |||| |||||||| ||| | | ||||||||||||| | |||||||| |||| |||||||||  | ||||||| |||||||||    
T  24004859 aaaacgaaagtttgcattctggagacatccttggacaggaggataactcttgtataatttgaagcttttgcaatccatttga 24004940  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 31262522 - 31262449
Alignment:
Q  419 gcattctgcaaaatataggttgcaaatcgcatatcattttccaagccttcaaaatttgaaatagtacatgacct 492  Q
    ||||||||||||||||| || |||||||||||||||| | || ||||||  || | | | ||||||||||||||    
T  31262522 gcattctgcaaaatatatgtagcaaatcgcatatcatctgccgagcctttgaagtctaatatagtacatgacct 31262449  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 14438148 - 14438206
Alignment:
Q  296 aatgaaagtttacatccggaagacatccttggagaagaggataattcttctataatttg 354  Q
    ||||||||||||||| | | ||| ||||||||| |||||||||||||||||||||||||    
T  14438148 aatgaaagtttacatgctggagaaatccttggacaagaggataattcttctataatttg 14438206  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 438 - 495
Target Start/End: Original strand, 7820005 - 7820062
Alignment:
Q  438 ttgcaaatcgcatatcattttccaagccttcaaaatttgaaatagtacatgacctgag 495  Q
    |||||||||| | |||||||||| |||||||||| ||| ||||||||||||| |||||    
T  7820005 ttgcaaatcgaagatcattttccgagccttcaaagtttaaaatagtacatgatctgag 7820062  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 495
Target Start/End: Complemental strand, 7815496 - 7815420
Alignment:
Q  419 gcattctgcaaaatataggttgcaaatcgcatatcattttccaagccttcaaaatttgaaatagtacatgacctgag 495  Q
    |||||||||||||||||  ||| |||||| | |||||||||| ||||||  || ||| ||||||||||||| |||||    
T  7815496 gcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgag 7815420  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 7872453 - 7872397
Alignment:
Q  295 aaatgaaagtttacatccggaagacatccttggagaagaggataattcttctataat 351  Q
    |||||||||||||||||  ||||| ||| ||||| ||||||||||||||||| ||||    
T  7872453 aaatgaaagtttacatcttgaagatatcgttggacaagaggataattcttctttaat 7872397  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 14435482 - 14435541
Alignment:
Q  295 aaatgaaagtttacatccggaagacatccttggagaagaggataattcttctataatttg 354  Q
    |||| ||||||||||| | | ||| ||||||||| |||| ||||||||||||||||||||    
T  14435482 aaattaaagtttacatgcaggagatatccttggacaagaagataattcttctataatttg 14435541  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 489
Target Start/End: Complemental strand, 7818446 - 7818356
Alignment:
Q  399 tcatgtcttgtaaaagcatggcattctgcaaaatataggttgcaaatcgcatatcattttccaagccttcaaaatttgaaatagtacatga 489  Q
    |||||||| |||||||| |  |||||| ||||||||| |||| |||||| | || ||||  |||||||| ||| ||| |||||||||||||    
T  7818446 tcatgtctcgtaaaagcctcacattcttcaaaatatatgttgtaaatcgaagataatttatcaagccttgaaagtttaaaatagtacatga 7818356  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 7819865 - 7819922
Alignment:
Q  295 aaatgaaagtttacatccggaagacatccttggagaagaggataattcttctataatt 352  Q
    ||||||||||||||||||   ||| ||||||||| | ||||| |||||||||||||||    
T  7819865 aaatgaaagtttacatccttgagatatccttggataggaggacaattcttctataatt 7819922  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 495
Target Start/End: Original strand, 14435597 - 14435694
Alignment:
Q  398 gtcatgtcttgtaaaagcatggcattctgcaaaatataggttgcaaatcgcatatcattttccaagccttcaaaatttgaaatagtacatgacctgag 495  Q
    ||||| |||||||||||| | ||||||||||| |||||  |||||||| | |  |||||| || | |||||||| ||| |||| |||||||| |||||    
T  14435597 gtcatatcttgtaaaagcctcgcattctgcaatatatattttgcaaattgaaggtcatttgccgatccttcaaagtttaaaattgtacatgatctgag 14435694  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 446
Target Start/End: Original strand, 14438256 - 14438304
Alignment:
Q  398 gtcatgtcttgtaaaagcatggcattctgcaaaatataggttgcaaatc 446  Q
    ||||| |||||||||||| | ||||||||||||||||| | ||||||||    
T  14438256 gtcatatcttgtaaaagcctcgcattctgcaaaatatatgatgcaaatc 14438304  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 15399457 - 15399401
Alignment:
Q  295 aaatgaaagtttacatccggaagacatccttggagaagaggataattcttctataat 351  Q
    |||||||||||||||||| |  || ||| ||||| |||| |||||||||||||||||    
T  15399457 aaatgaaagtttacatcctggtgatatcattggacaagaagataattcttctataat 15399401  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 15411244 - 15411188
Alignment:
Q  295 aaatgaaagtttacatccggaagacatccttggagaagaggataattcttctataat 351  Q
    |||||||||||||||||| |  || ||| ||||| |||| |||||||||||||||||    
T  15411244 aaatgaaagtttacatcctggtgatatcattggacaagaagataattcttctataat 15411188  T

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Target: scaffold1377 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1377
Description:

Target: scaffold1377; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 495
Target Start/End: Original strand, 1347 - 1444
Alignment:
Q  398 gtcatgtcttgtaaaagcatggcattctgcaaaatataggttgcaaatcgcatatcattttccaagccttcaaaatttgaaatagtacatgacctgag 495  Q
    ||||| |||||||||||| | ||||||||||||||||| ||||||||||| | || |||  || |||||||||| ||| |||| ||||| || |||||    
T  1347 gtcatatcttgtaaaagcctcgcattctgcaaaatatatgttgcaaatcgaagattattggccgagccttcaaagtttaaaattgtacaggatctgag 1444  T

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Target: scaffold1089 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 514 - 572
Alignment:
Q  295 aaatgaaagtttacatccggaagacatccttggagaagaggataattcttctataattt 353  Q
    ||||| |||||||||| | | ||| ||||||||| ||||||| ||||||||||||||||    
T  514 aaatgtaagtttacatgctggagaaatccttggacaagaggacaattcttctataattt 572  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 489
Target Start/End: Original strand, 2467550 - 2467619
Alignment:
Q  420 cattctgcaaaatataggttgcaaatcgcatatcattttccaagccttcaaaatttgaaatagtacatga 489  Q
    |||||||||| ||||| ||||||||||| | ||||||| |  | |||||||||||| |||| ||||||||    
T  2467550 cattctgcaatatatatgttgcaaatcgaagatcatttgcagacccttcaaaatttaaaattgtacatga 2467619  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 371
Target Start/End: Original strand, 43684389 - 43684461
Alignment:
Q  300 aaagtttacatccgga-agacatccttggagaagaggataattcttctataatttgctgtttttgcattccat 371  Q
    |||||||||||||||| | | ||||||||| | | |||||||| |||||||||||  || |||||||||||||    
T  43684389 aaagtttacatccggagacatatccttggacatgtggataatttttctataattttatgcttttgcattccat 43684461  T

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