View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4324_low_6 (Length: 436)
Name: NF4324_low_6
Description: NF4324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4324_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 20 - 425
Target Start/End: Complemental strand, 46081336 - 46080931
Alignment:
| Q |
20 |
ataatagcccgagagagtaaacctctcttgaaagcaacgttgaagagaagaaaggaagggcatgtgataagtggcgacaggaaaacaacgttggtgaagg |
119 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46081336 |
ataatagcccgtgagagtaagcgtctcttgaaagccacgtggaagagaagaaaggaagggcatgtgataagtggcgacaggaaaacaacgttggtgaagg |
46081237 |
T |
|
| Q |
120 |
cgaatcggacaagtttccgacaagtttggatagaaacgaagagaaggtggtggtagtaatcctaagtgatcttcttcgaaggaaatagtacgacatattt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46081236 |
cgaatcggacaagtttccgacaagtttggatagaaacgaagagaaggtggtggtagtaatcctaagtgatcttcttcgaaggaaatagtacgacatattt |
46081137 |
T |
|
| Q |
220 |
aggaaggaaaatattctaccaagaaggnnnnnnngacaacttcgagctttgctgaaagaatgaaaacgaagaacaaacttatgatgctatgctgcaggga |
319 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46081136 |
aggaaggaaaatattctaccaagaaggaaaaaaagacaacttcgagctttgctgaaagaatgaaaacgaagaacaaacttatgatgctatgctgcaggga |
46081037 |
T |
|
| Q |
320 |
gtgccgaacaagttcaactctctaatgggctgggccgggacagttaatagttagatgtatgctttgctggccggtaattgctcttctctcgtctgttttt |
419 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
46081036 |
gtgccgaacaagttcaactgtctaatgggctgggccgggacagttaatagtttgatgtatgctttgttggccggtaattgctcttctctcatctgttttt |
46080937 |
T |
|
| Q |
420 |
gttcat |
425 |
Q |
| |
|
| |||| |
|
|
| T |
46080936 |
gctcat |
46080931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University