View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4325-Insertion-16 (Length: 159)
Name: NF4325-Insertion-16
Description: NF4325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4325-Insertion-16 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 5e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 5e-79
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 38005335 - 38005183
Alignment:
| Q |
7 |
gggtccaaataacagggatacaatgttgtttgagaatgcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctatt |
106 |
Q |
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| T |
38005335 |
gggtccaaataacagggatacaatgttgtttgagaatgcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctatt |
38005236 |
T |
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| Q |
107 |
ttacctatgaggagcttgttgaggctttctaaaaatgttaatgttgatgattt |
159 |
Q |
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| T |
38005235 |
ttacctatgaggagcttgttgaggctttctaaaaatgttgatgttgatgattt |
38005183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 4e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 26462476 - 26462624
Alignment:
| Q |
11 |
ccaaataacagggatacaatgttgtttgagaatgcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttac |
110 |
Q |
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| T |
26462476 |
ccaaataacaaggatacaatgttgtttgagaaagcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttac |
26462575 |
T |
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| Q |
111 |
ctatgaggagcttgttgaggctttctaaaaatgttaatgttgatgattt |
159 |
Q |
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| T |
26462576 |
ctatgaggagcttgttgagactttctaaaaatgttgttgttgatgattt |
26462624 |
T |
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