View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4325-Insertion-18 (Length: 219)

Name: NF4325-Insertion-18
Description: NF4325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4325-Insertion-18
NF4325-Insertion-18
[»] chr4 (12 HSPs)
chr4 (20-198)||(4008766-4008944)
chr4 (3-165)||(3985786-3985948)
chr4 (3-165)||(3816395-3816557)
chr4 (10-144)||(4001113-4001247)
chr4 (10-143)||(4024008-4024141)
chr4 (20-165)||(4217417-4217562)
chr4 (3-150)||(3956638-3956785)
chr4 (20-132)||(3934142-3934254)
chr4 (3-161)||(3808823-3808981)
chr4 (3-69)||(3800482-3800548)
chr4 (3-132)||(3920904-3921033)
chr4 (10-83)||(3964684-3964757)
[»] chr5 (1 HSPs)
chr5 (3-185)||(13396740-13396922)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 4008944 - 4008766
Alignment:
Q  20 taccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaaaagctttngtgtggagtgaagg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||    
T  4008944 taccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaagtagaaaagctttggtatggagtgaagg 4008845  T
Q  120 taattgaatatgtatcttccagattaaatttgtctaaattcaaggagtttgcaattaattacttaagcgtttgtttgat 198  Q
    ||||||| |||||||||||| ||||||||||  ||  ||||||||| |||| || ||||||||||||| | ||||||||    
T  4008844 taattgactatgtatcttcctgattaaatttcgcttgattcaaggaatttgtaactaattacttaagcttatgtttgat 4008766  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 3985948 - 3985786
Alignment:
Q  3 atcttcattggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaaaagct 102  Q
    ||||||||||| | || ||||||||| | ||||||||||||||||||||||| ||||| ||||||||||| |||||||| | ||||| | ||||||||||    
T  3985948 atcttcattgggtacattaccctctagagtcattgccaaagaagttttctgcagagaaacttgttatattggacttgtcgtatagcctagtagaaaagct 3985849  T
Q  103 ttngtgtggagtgaaggtaattgaatatgtatcttccagattaaatttgtctaaattcaagga 165  Q
    || |||||||||  |||||||||||||||| |||  |||||||||||| || |||||||||||    
T  3985848 ttggtgtggagtacaggtaattgaatatgtgtctatcagattaaatttatcaaaattcaagga 3985786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 3816557 - 3816395
Alignment:
Q  3 atcttcattggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaaaagct 102  Q
    ||||||||||||   ||| ||||||||||||||| ||| |||||||||||||  |||||||||||||||| |||||||||  ||| | | | ||||||||    
T  3816557 atcttcattggacatactgccctctaaaatcattcccagagaagttttctgcaaagaatcttgttatattggacttgtcagatagtctagtggaaaagct 3816458  T
Q  103 ttngtgtggagtgaaggtaattgaatatgtatcttccagattaaatttgtctaaattcaagga 165  Q
    || |||||||||| ||||||||| |||| ||||||||| ||||||||| ||| ||||||||||    
T  3816457 ttggtgtggagtgcaggtaattggatatttatcttccaaattaaatttatcttaattcaagga 3816395  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 4001247 - 4001113
Alignment:
Q  10 ttggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaaaagctttngtgt 109  Q
    |||||| || ||||||||||||||||| ||||||||||||||||   |||||||||||||||| ||||| |||  ||| | | | ||||| |||| ||||    
T  4001247 ttggatacattaccctctaaaatcattcccaaagaagttttctggaaagaatcttgttatattggacttttcacatagtcgagtggaaaatctttggtgt 4001148  T
Q  110 ggagtgaaggtaattgaatatgtatcttccagatt 144  Q
    |||||| |||||||||||||||| || ||||||||    
T  4001147 ggagtgcaggtaattgaatatgtgtcatccagatt 4001113  T

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Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 4024141 - 4024008
Alignment:
Q  10 ttggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaaaagctttngtgt 109  Q
    ||||||| | ||||||||||||||||| ||| |||||||||||||  |||||||||||||||| |||||||||  ||| | | | |||||||||| ||||    
T  4024141 ttggatgaattaccctctaaaatcattcccagagaagttttctgcaaagaatcttgttatattggacttgtcagatagtctagtggaaaagctttggtgt 4024042  T
Q  110 ggagtgaaggtaattgaatatgtatcttccagat 143  Q
    |||||| |||||| ||||||| | ||||| ||||    
T  4024041 ggagtgcaggtaagtgaatatttctcttcaagat 4024008  T

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Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 4217562 - 4217417
Alignment:
Q  20 taccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaaaagctttngtgtggagtgaagg 119  Q
    ||||||||||||||||| ||| |||| |||||||| |||||||||||||||||  |||||   | |||  || | |||||||||| |||||||||  |||    
T  4217562 taccctctaaaatcattcccagagaacttttctgcagagaatcttgttatattgaacttgcgttatagtaaagtggaaaagctttggtgtggagtacagg 4217463  T
Q  120 taattgaatatgtatcttccagattaaatttgtctaaattcaagga 165  Q
    ||||||||||||| |||| ||||| |||||| ||| ||||||||||    
T  4217462 taattgaatatgtgtctttcagatgaaatttatcttaattcaagga 4217417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 150
Target Start/End: Original strand, 3956638 - 3956785
Alignment:
Q  3 atcttcattggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaaaagct 102  Q
    |||||||||||||    ||||||||||||||| |  || ||||||||||||| ||||||||||||||||| ||| |||||  ||||| | | ||||| ||    
T  3956638 atcttcattggatatgttaccctctaaaatcactctcagagaagttttctgcagagaatcttgttatattggacctgtcaggtagcctactggaaaaact 3956737  T
Q  103 ttngtgtggagtgaaggtaattgaatatgtatcttccagattaaattt 150  Q
    || |||||||||| || |||||||||| || ||||| |||||||||||    
T  3956738 ttggtgtggagtgcagataattgaatacgtgtcttctagattaaattt 3956785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 3934142 - 3934254
Alignment:
Q  20 taccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaaaagctttngtgtggagtgaagg 119  Q
    ||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| |||||||   |||| | | | |||||||| | |||||||||  |||    
T  3934142 taccctctaaaatcattcccagagaagttttctgcagagaatcttgttatattggacttgtatcttagtcgaatggaaaagctatggtgtggagtacagg 3934241  T
Q  120 taattgaatatgt 132  Q
    |||||||||||||    
T  3934242 taattgaatatgt 3934254  T

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Target: chr4; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 3808981 - 3808823
Alignment:
Q  3 atcttcattggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaaaagct 102  Q
    |||||||||||||| | |  |||||||||||||| ||| |||| |||||||| |||||||||||||||||  ||||||    |||  || | ||||||||    
T  3808981 atcttcattggatgtattgtcctctaaaatcattcccagagaacttttctgcagagaatcttgttatattgaacttgtatgatagtaaaatggaaaagct 3808882  T
Q  103 ttngtgtggagtgaaggtaattgaatatgtatcttccagattaaatttgtctaaattca 161  Q
    || | |||||||| ||||||||| ||| || ||||||| ||||||||| ||| ||||||    
T  3808881 ttggcgtggagtgcaggtaattggatacgtgtcttccaaattaaatttatcttaattca 3808823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 3800548 - 3800482
Alignment:
Q  3 atcttcattggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttat 69  Q
    |||||||||||||||| ||||||||||||||||| ||| |||||||||||||  |||||||||||||    
T  3800548 atcttcattggatgcattaccctctaaaatcattcccagagaagttttctgcaaagaatcttgttat 3800482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 3920904 - 3921033
Alignment:
Q  3 atcttcattggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaaaagct 102  Q
    |||||||||||||  | |||||||||||||||||  || ||||||||| ||| ||||||||||||||||| |||||||   || | | | | ||||||||    
T  3920904 atcttcattggatagattaccctctaaaatcattctcagagaagttttttgctgagaatcttgttatattggacttgtatcttggtcgaatggaaaagct 3921003  T
Q  103 ttngtgtggagtgaaggtaattgaatatgt 132  Q
     | |||||||||  ||||||||||||||||    
T  3921004 atggtgtggagtacaggtaattgaatatgt 3921033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 3964684 - 3964757
Alignment:
Q  10 ttggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcat 83  Q
    ||||||||| |||||| | |||||||||||| |  | ||||| |||||||| || |||||||| ||||||||||    
T  3964684 ttggatgcattaccctttgaaatcattgccagatgaattttcagcggagaaactcgttatattggacttgtcat 3964757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 13396922 - 13396740
Alignment:
Q  3 atcttcattggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaaaagct 102  Q
    ||||| |||||||||| ||||||||||||||||| ||| ||||||||||||  || |||||||||||| | | |||| ||| |||||   ||||||||||    
T  13396922 atctttattggatgcattaccctctaaaatcattcccagagaagttttctgttgataatcttgttatactgggcttgccatatagccttgtagaaaagct 13396823  T
Q  103 ttngtgtggagtgaaggtaattgaatatgtatcttccagattaaatttgtctaaattcaaggagtttgcaattaattacttaa 185  Q
    || |||||||||  ||||||||||||| || |||| |||||||||||| ||| |||||||||| ||   ||||||||||||||    
T  13396822 ttggtgtggagtacaggtaattgaatacgtgtctttcagattaaatttatcttaattcaaggaattataaattaattacttaa 13396740  T

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