View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4325-Insertion-26 (Length: 58)

Name: NF4325-Insertion-26
Description: NF4325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4325-Insertion-26
NF4325-Insertion-26
[»] chr3 (10 HSPs)
chr3 (5-58)||(7750429-7750482)
chr3 (14-58)||(8568531-8568575)
chr3 (11-58)||(5281086-5281133)
chr3 (6-45)||(6142726-6142765)
chr3 (6-49)||(6266130-6266173)
chr3 (13-48)||(6590910-6590945)
chr3 (6-47)||(6259595-6259636)
chr3 (13-49)||(5250580-5250616)
chr3 (11-49)||(4388517-4388555)
chr3 (13-47)||(6900529-6900563)
[»] chr1 (1 HSPs)
chr1 (6-47)||(35139963-35140004)


Alignment Details
Target: chr3 (Bit Score: 38; Significance: 0.0000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 7750482 - 7750429
Alignment:
Q  5 agatacaagagcaatttgaacttaaagcttgggtccatgtttcagtattttttg 58  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||| || |||||    
T  7750482 agatacatgagcaatttgaacttaaagcttgggtctatgtttcagaatcttttg 7750429  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 8568531 - 8568575
Alignment:
Q  14 agcaatttgaacttaaagcttgggtccatgtttcagtattttttg 58  Q
    |||||||||||||||||||||||||||||||||||| || |||||    
T  8568531 agcaatttgaacttaaagcttgggtccatgtttcagaatcttttg 8568575  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 5281133 - 5281086
Alignment:
Q  11 aagagcaatttgaacttaaagcttgggtccatgtttcagtattttttg 58  Q
    ||||||| ||||||| ||||||||||||| ||||||||| ||||||||    
T  5281133 aagagcattttgaacataaagcttgggtctatgtttcagaattttttg 5281086  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 6142765 - 6142726
Alignment:
Q  6 gatacaagagcaatttgaacttaaagcttgggtccatgtt 45  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  6142765 gatacaggagcaatttgaacttaatgcttgggtccatgtt 6142726  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 6266173 - 6266130
Alignment:
Q  6 gatacaagagcaatttgaacttaaagcttgggtccatgtttcag 49  Q
    |||||| ||||| |||||| ||||||||||||||||||||||||    
T  6266173 gatacaggagcagtttgaatttaaagcttgggtccatgtttcag 6266130  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 6590910 - 6590945
Alignment:
Q  13 gagcaatttgaacttaaagcttgggtccatgtttca 48  Q
    ||||||||||||||||||||||||||| ||||||||    
T  6590910 gagcaatttgaacttaaagcttgggtctatgtttca 6590945  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 6259636 - 6259595
Alignment:
Q  6 gatacaagagcaatttgaacttaaagcttgggtccatgtttc 47  Q
    |||||| ||||| |||||| ||||||||||||||||||||||    
T  6259636 gatacaggagcagtttgaatttaaagcttgggtccatgtttc 6259595  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 5250616 - 5250580
Alignment:
Q  13 gagcaatttgaacttaaagcttgggtccatgtttcag 49  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  5250616 gagcattttgaacttaaagcttgggtctatgtttcag 5250580  T

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Target: chr3; HSP #9
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 4388517 - 4388555
Alignment:
Q  11 aagagcaatttgaacttaaagcttgggtccatgtttcag 49  Q
    ||||||| ||||||||||||||||||||| | |||||||    
T  4388517 aagagcattttgaacttaaagcttgggtctacgtttcag 4388555  T

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Target: chr3; HSP #10
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 6900563 - 6900529
Alignment:
Q  13 gagcaatttgaacttaaagcttgggtccatgtttc 47  Q
    ||||| |||||| ||||||||||||||||||||||    
T  6900563 gagcattttgaaattaaagcttgggtccatgtttc 6900529  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 35139963 - 35140004
Alignment:
Q  6 gatacaagagcaatttgaacttaaagcttgggtccatgtttc 47  Q
    |||||| ||||| |||||| ||||||||||||||||||||||    
T  35139963 gatacatgagcagtttgaatttaaagcttgggtccatgtttc 35140004  T

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