View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4325-Insertion-3 (Length: 218)
Name: NF4325-Insertion-3
Description: NF4325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4325-Insertion-3 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 9393381 - 9393598
Alignment:
| Q |
1 |
cagatatgggtaatcgattttccagcttaaaaaattcaaatttctgtaacgttacattatggtaatcaattacaaaactgtagtattggattaccacatg |
100 |
Q |
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| T |
9393381 |
cagatatgggtaatcgattt-ccagcttaaaaaattcaaatttctgtaacgttacattatggtaatcgattacaaaattgtagtaatggattaccacatg |
9393479 |
T |
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| Q |
101 |
cagaaactc--tatttttaatcaatgtgattttacgctcgttccttttgattgtggagcctctttgtatagcatagccttgcttcgtggacattttctaa |
198 |
Q |
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| T |
9393480 |
cagaaactcaatatttttaatcaatgtg-ttttacgctcgttccttttgattgtagagcctctttgtataacatagccttgcttcgtggacattttctaa |
9393578 |
T |
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| Q |
199 |
agcctctataaatatgttta |
218 |
Q |
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|||||||||||||||||||| |
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| T |
9393579 |
agcctctataaatatgttta |
9393598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 29410737 - 29410700
Alignment:
| Q |
176 |
cttgcttcgtggacattttctaaagcctctataaatat |
213 |
Q |
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| T |
29410737 |
cttgcttcatggacattttctaaagcctctataaatat |
29410700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 17979303 - 17979227
Alignment:
| Q |
135 |
ctcgttccttttgattgtggagcctctttgtatagcatagccttgcttcgtggacattttctaaagcctctataaatat |
213 |
Q |
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| T |
17979303 |
ctcgttccttttcactttggagcctctttgaaggg--tagccttgcttcgtggacattttctaaagcctctataaatat |
17979227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 39526214 - 39526178
Alignment:
| Q |
177 |
ttgcttcgtggacattttctaaagcctctataaatat |
213 |
Q |
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| T |
39526214 |
ttgcttcatggacattttctaaagcctctataaatat |
39526178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 17979398 - 17979354
Alignment:
| Q |
22 |
ccagcttaaaaaattcaaatttctgtaacgttacattatggtaat |
66 |
Q |
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| T |
17979398 |
ccagcttaaaaaattcaaacttatgtaactttacagtatggtaat |
17979354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 21570827 - 21570785
Alignment:
| Q |
175 |
ccttgcttcgtggacattttctaaagcctctataaatatgttt |
217 |
Q |
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| T |
21570827 |
ccttgcttcatggacattttctaaagcctctataaatatgttt |
21570785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 7210971 - 7211012
Alignment:
| Q |
172 |
tagccttgcttcgtggacattttctaaagcctctataaatat |
213 |
Q |
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| T |
7210971 |
tagcattgcttcatggacattttctaaagcctctataaatat |
7211012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 25114975 - 25114934
Alignment:
| Q |
172 |
tagccttgcttcgtggacattttctaaagcctctataaatat |
213 |
Q |
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| T |
25114975 |
tagcattgcttcatggacattttctaaagcctctataaatat |
25114934 |
T |
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