View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4325-Insertion-7 (Length: 166)
Name: NF4325-Insertion-7
Description: NF4325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4325-Insertion-7 |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0331 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 1e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 1e-79
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 1339037 - 1339194
Alignment:
| Q |
9 |
acgaggagtagtcctgtagctcttttcatcatcgctattatcattttcaacctgtttgatagaagaaaaccaaggaaagaaatggaatcaaaattttata |
108 |
Q |
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| T |
1339037 |
acgaggagtagtcccgtagctcttttcatcatcgctattatcattttcaacctgtttgatagaagaaaaccaaggaaagaaatggaatcaaaattttata |
1339136 |
T |
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| Q |
109 |
agaatcaaacaaactatattaagaatgtatttgtgagcaaaaacaacataccggtggg |
166 |
Q |
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| T |
1339137 |
agaatcaaacaaactatattaagaatgtatctgtgagcaaaaacaacataccggtggg |
1339194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 3e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 31940873 - 31941030
Alignment:
| Q |
9 |
acgaggagtagtcctgtagctcttttcatcatcgctattatcattttcaacctgtttgatagaagaaaaccaaggaaagaaatggaatcaaaattttata |
108 |
Q |
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| T |
31940873 |
acgaggagtagtcccatagctcctttcatcatcgctatcatcattttcaacctgtttgataaaagaaaaccgagttaagaagtggaatcaaaattttgta |
31940972 |
T |
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| Q |
109 |
agaatcaaacaaactatattaagaatgtatttgtgagcaaaaacaacataccggtggg |
166 |
Q |
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| T |
31940973 |
agaatcaaacaaactatattcacaatgtattagtgaacaaaatcaacatactggtggg |
31941030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 13537423 - 13537562
Alignment:
| Q |
10 |
cgaggagtagtcctgtagctcttttcatcatcgctattatcattttcaacctgtttgatagaagaaaaccaaggaaagaaatggaatcaaaattttataa |
109 |
Q |
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| T |
13537423 |
cgaggagaagccccgtagctcctttcatcctggctctcatcatttttaatctgtttgataaaaaaaaac-aaggaaaaaaatggcatcaaaatattataa |
13537521 |
T |
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| Q |
110 |
gaatcaaacaaactatattaagaatgtatttgtgagcaaaa |
150 |
Q |
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| T |
13537522 |
gaatcaaacaaactctattcataatgtatttgtgagcaaaa |
13537562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0331 (Bit Score: 91; Significance: 2e-44; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 2628 - 2478
Alignment:
| Q |
9 |
acgaggagtagtcctgtagctcttttcatcatcgctattatcattttcaacctgtttgatagaagaaaaccaaggaaagaaatggaatcaaaattttata |
108 |
Q |
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|||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| || |||||| | |||||||||||||||| |
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| T |
2628 |
acgaggagtagtcccatagctcctttcatcatcgctatcatcattttcaacctgtttgataaaagaaaacctagtaaagaagtcgaatcaaaattttata |
2529 |
T |
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| Q |
109 |
agaatcaaacaaactatattaagaatgtatttgtgagcaaaaacaacatac |
159 |
Q |
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| T |
2528 |
agaatcaaacaaactatattcacaatgtatcagtgaacaaaatcaacatac |
2478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 2e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 9391210 - 9391366
Alignment:
| Q |
9 |
acgaggagtagtcctgtagctcttttcatcatcgctattatcattttcaacctgtttgatagaagaaaaccaaggaaagaaatggaatcaaaattttata |
108 |
Q |
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|||||||||||||| |||||| |||||||||| |||| |||||||||||||||||||||| | ||||||| || |||||| |||||||||||||||||| |
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| T |
9391210 |
acgaggagtagtcccatagctcctttcatcatcactatcatcattttcaacctgtttgataaacgaaaaccgagtaaagaagtggaatcaaaattttata |
9391309 |
T |
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| Q |
109 |
agaatcaaacaaactatattaagaatgtatttgtgagcaaaaacaacataccggtggg |
166 |
Q |
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|||||||||||||||||||| | |||||||| |||| | ||| |||||||| |||||| |
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| T |
9391310 |
agaatcaaacaaactatattcacaatgtattagtgaac-aaatcaacatactggtggg |
9391366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 5640913 - 5641063
Alignment:
| Q |
9 |
acgaggagtagtcctgtagctcttttcatcatcgctattatcattttcaacctgtttgatagaag-aaaaccaaggaaagaaatggaatcaaaattttat |
107 |
Q |
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| T |
5640913 |
acgaggagtggtcccataactcttttcatcatcgctgtcatcattttcaacctgattgataaaagaaaaaaaaaggaaagaaatggaa-ataaatttttt |
5641011 |
T |
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| Q |
108 |
aagaatcaaacaaactatattaagaatgtatttgtgagcaaaaacaacatac |
159 |
Q |
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| T |
5641012 |
actaatcaaacacactatattcacaatgtatttgtgagcaaaattaacatac |
5641063 |
T |
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