View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4325_low_3 (Length: 463)
Name: NF4325_low_3
Description: NF4325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4325_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 153 - 445
Target Start/End: Original strand, 15811803 - 15812097
Alignment:
| Q |
153 |
taataccatgtggttttgatttatagcatctgattgaaaaaca--gtgtttgtttctttccttatgcagaactactattgtaatacacctctcaatcagg |
250 |
Q |
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| T |
15811803 |
taataccatgcggttttgatttatagcatctgattgaaaaacacagtgtttgtttctttccttatgcagaactactattgtaatacacctctcaatcagg |
15811902 |
T |
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| Q |
251 |
agaaatgagattgttcaaaactttattcgttaatattttggtttacttgttgcttgtaaggactatgaggattataggttttgttgatattgatatattt |
350 |
Q |
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| T |
15811903 |
agaaatgagattgttcaaaactttattcgttaatattttggtttacttgttgcttgtaaggactatgaggattataggttttgttgatattgatatattt |
15812002 |
T |
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| Q |
351 |
gatatacatgaagtgaattgaatcgcttcctttatgcgttcatgttaattccataggattttagtgacttctgattctacttaactctgaacaaa |
445 |
Q |
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| T |
15812003 |
gatatacatgaagtgaattgaatcgcttcctttatgcgttcatgttaattccataggattttagtgacttctgattctacttaactctgaacaaa |
15812097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 15811680 - 15811740
Alignment:
| Q |
11 |
cacagatgtcgtggtttaaccaggtgctttcttctgtgttttctttaagatttaagataac |
71 |
Q |
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| T |
15811680 |
cacagatgtcgtggtttaaccaggtgctttcttctgtgttttctttaagatttaagataac |
15811740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 225 - 345
Target Start/End: Original strand, 15798380 - 15798501
Alignment:
| Q |
225 |
ctattgtaatacacctctcaatcaggagaaatgagattgtt-caaaactttattcgttaatattttggtttacttgttgcttgtaaggactatgaggatt |
323 |
Q |
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| T |
15798380 |
ctattttaatacacccatcaaataagagaaatgaggttgtttcgaaactttattcgttaatattttggtttacttgttgattggaaggagtatgaagatt |
15798479 |
T |
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| Q |
324 |
ataggttttgttgatattgata |
345 |
Q |
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| T |
15798480 |
agaggctttgttgatattgata |
15798501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 15804033 - 15804073
Alignment:
| Q |
250 |
gagaaatgagattg-ttcaaaactttattcgttaatatttt |
289 |
Q |
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| T |
15804033 |
gagaaatgagattgcttcaaaactttattcgttaatatttt |
15804073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 15804126 - 15804171
Alignment:
| Q |
354 |
atacatgaagtgaattgaatcgcttcctttatgcgtt-catgttaa |
398 |
Q |
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| T |
15804126 |
atacatgaagcgaattgaatcgcttcctttatgtgttacatgttaa |
15804171 |
T |
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