View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4325_low_6 (Length: 270)
Name: NF4325_low_6
Description: NF4325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4325_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 11589099 - 11589360
Alignment:
| Q |
1 |
agatcaagaatagagattttttggagcaatcatgggccatattcctcaggatgaagttgagcaaaaattatttgaggccttggaaaatggaaattgataa |
100 |
Q |
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| T |
11589099 |
agatcaagaatagagattttttggagcaatcatgggccatattcttgaggatgaagttgagcaaaaattatttgaggccttggaaaatggaaattgataa |
11589198 |
T |
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| Q |
101 |
tctaattattatagaaattcctgctaatgctgatgattttcaagttgtgaacatatcagaaggtgagaataaagggaagaaaacttcacatcttaaaagt |
200 |
Q |
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| T |
11589199 |
tctaattatcatagaaattcctgctaatgctgatgattttcaaattgtgaacatttcagaaggtgagaataaagggaagaaaacttcacatctt------ |
11589292 |
T |
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| Q |
201 |
aattatagaactataggaaaaacttgtcatcctaaaccctttatatgatgattatttattgaaacataa |
269 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
11589293 |
-attatagaactataggaaaaacttgtcatcctaaactttttagatgatgattatttattgaaacataa |
11589360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 11601684 - 11601945
Alignment:
| Q |
1 |
agatcaagaatagagattttttggagcaatcatgggccatattcctcaggatgaagttgagcaaaaattatttgaggccttggaaaatggaaattgataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11601684 |
agatcaagaatagagattttttggagcaatcatgggccatattcttgaggatgaagttgagcaaaaattatttgaggccttggaaaatggaaattgataa |
11601783 |
T |
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| Q |
101 |
tctaattattatagaaattcctgctaatgctgatgattttcaagttgtgaacatatcagaaggtgagaataaagggaagaaaacttcacatcttaaaagt |
200 |
Q |
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| T |
11601784 |
tctaattatcatagaaattcctgctaatgctgatgattttcaaattgtgaacatttcagaaggtgagaataaagggaagaaaacttcacatctt------ |
11601877 |
T |
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| Q |
201 |
aattatagaactataggaaaaacttgtcatcctaaaccctttatatgatgattatttattgaaacataa |
269 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
11601878 |
-attatagaactataggaaaaacttgtcatcctaaactttttagatgatgattatttattgaaacataa |
11601945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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