View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4325_low_8 (Length: 260)

Name: NF4325_low_8
Description: NF4325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4325_low_8
NF4325_low_8
[»] chr4 (4 HSPs)
chr4 (1-243)||(29938713-29938955)
chr4 (90-222)||(51155217-51155349)
chr4 (90-222)||(51144073-51144205)
chr4 (20-93)||(11999202-11999275)
[»] chr8 (2 HSPs)
chr8 (20-83)||(35981482-35981545)
chr8 (22-90)||(8575741-8575809)
[»] chr3 (4 HSPs)
chr3 (14-83)||(43794641-43794710)
chr3 (52-91)||(44324211-44324250)
chr3 (14-92)||(7258684-7258762)
chr3 (53-93)||(27776112-27776152)
[»] chr1 (5 HSPs)
chr1 (35-94)||(16807931-16807990)
chr1 (15-93)||(52017763-52017841)
chr1 (19-94)||(29234230-29234305)
chr1 (48-94)||(35856735-35856781)
chr1 (52-93)||(25971087-25971128)
[»] chr5 (1 HSPs)
chr5 (55-92)||(32855950-32855987)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 29938955 - 29938713
Alignment:
Q  1 aacacatgtaggaagggggaatgtggtgacctgggtttgaacccgaaatttcacataaaatgtcctcacaaccaaaccactaggttgtaacaactttaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29938955 aacacatgtaggaagggggaatgtggtgacctgggtttgaacccgaaatttcacataaaatgtcctcacaaccaaaccactaggttgtaacaactttaaa 29938856  T
Q  101 tcaaacatttaaaaatttactaacgacgacttactgtggtcaggtgtctctgaaatttgtatacctggcggcgggtagctttgttttgtcatgtttgcgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  29938855 tcaaacatttaaaaatttactaacgacgacttactgtggtcaggtgtctctgaaatttgtatacctggcggcgggtagctttgttgcgtcatgtttgcgt 29938756  T
Q  201 aagtacattagtttcgcagttaatttgtacagtctatcttatt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29938755 aagtacattagtttcgcagttaatttgtacagtctatcttatt 29938713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 51155217 - 51155349
Alignment:
Q  90 acaactttaaatcaaacatttaaaaatttactaacgacgacttactgtggtcaggtgtctctgaaatttgtatacctggcggcgggtagctttgttttgt 189  Q
    |||||||| ||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||| ||||||| |||||||  ||    
T  51155217 acaactttgaatcaaacatttagaaattttctaacgatgacttactgtgatcaggtgtctctgaaatttgtatacttggctgcgggtacctttgttgcgt 51155316  T
Q  190 catgtttgcgtaagtacattagtttcgcagtta 222  Q
    ||| |||||||||||||||||||||| ||||||    
T  51155317 catttttgcgtaagtacattagtttctcagtta 51155349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 51144073 - 51144205
Alignment:
Q  90 acaactttaaatcaaacatttaaaaatttactaacgacgacttactgtggtcaggtgtctctgaaatttgtatacctggcggcgggtagctttgttttgt 189  Q
    |||||||| ||||||||||||| ||||||  |||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||| |||||||  ||    
T  51144073 acaactttgaatcaaacatttagaaatttgataacgacgacttactgtgatcaggtgtctctgaaatttgtatacttggctgcgggtacctttgttgcgt 51144172  T
Q  190 catgtttgcgtaagtacattagtttcgcagtta 222  Q
    ||| ||||||||||| |||||||||| ||||||    
T  51144173 catttttgcgtaagtgcattagtttctcagtta 51144205  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 11999202 - 11999275
Alignment:
Q  20 aatgtggtgacctgggtttgaacccgaaatttcacataaaatgtcctcacaaccaaaccactaggttgtaacaa 93  Q
    ||||||||| || ||||||||| |||  |||  ||||||||||||||||||||  |||||||||| ||| ||||    
T  11999202 aatgtggtggcccgggtttgaatccgggattcaacataaaatgtcctcacaactcaaccactaggctgtgacaa 11999275  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 35981545 - 35981482
Alignment:
Q  20 aatgtggtgacctgggtttgaacccgaaatttcacataaaatgtcctcacaaccaaaccactag 83  Q
    |||||||||||| |||||||||||||| ||| || |||||||||| ||||| ||||||||||||    
T  35981545 aatgtggtgacccgggtttgaacccgagattccatataaaatgtcttcacagccaaaccactag 35981482  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 8575809 - 8575741
Alignment:
Q  22 tgtggtgacctgggtttgaacccgaaatttcacataaaatgtcctcacaaccaaaccactaggttgtaa 90  Q
    ||||| |||| |||||||||||||  ||| || ||||||| |||||||| |||||||| |||| |||||    
T  8575809 tgtggagacccgggtttgaacccgggattccatataaaatatcctcacagccaaaccattaggctgtaa 8575741  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 43794710 - 43794641
Alignment:
Q  14 agggggaatgtggtgacctgggtttgaacccgaaatttcacataaaatgtcctcacaaccaaaccactag 83  Q
    |||||||||||||||| |  |||||||||||   ||| ||||||||| ||||||||||||||||||||||    
T  43794710 agggggaatgtggtgatccaggtttgaacccatgattccacataaaacgtcctcacaaccaaaccactag 43794641  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 91
Target Start/End: Complemental strand, 44324250 - 44324211
Alignment:
Q  52 cacataaaatgtcctcacaaccaaaccactaggttgtaac 91  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  44324250 cacataaaatgacctcacagccaaaccactaggttgtaac 44324211  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 7258762 - 7258684
Alignment:
Q  14 agggggaatgtggtgacctgggtttgaacccgaaatttcacataaaatgtcctcacaaccaaaccactaggttgtaaca 92  Q
    |||||||||||||||||| | |||  |||| |  ||| ||||||||||||||||| | | |||||||||||||| ||||    
T  7258762 agggggaatgtggtgacccgagttcaaacctgggattccacataaaatgtcctcagagctaaaccactaggttgcaaca 7258684  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 27776152 - 27776112
Alignment:
Q  53 acataaaatgtcctcacaaccaaaccactaggttgtaacaa 93  Q
    ||||||||||| |||||| |||||||||||| |||||||||    
T  27776152 acataaaatgtgctcacagccaaaccactagattgtaacaa 27776112  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 16807990 - 16807931
Alignment:
Q  35 gtttgaacccgaaatttcacataaaatgtcctcacaaccaaaccactaggttgtaacaac 94  Q
    ||||||||||| ||||  |||||||||||||||||| ||||||||||| ||| |||||||    
T  16807990 gtttgaacccggaattcaacataaaatgtcctcacagccaaaccactatgttataacaac 16807931  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 52017841 - 52017763
Alignment:
Q  15 gggggaatgtggtgacctgggtttgaacccgaaatttcacataaaatgtcctcacaaccaaaccactaggttgtaacaa 93  Q
    ||||||||||||||||||||||| ||| ||    || |||| |||||||||||||| ||||||||||| |||| |||||    
T  52017841 gggggaatgtggtgacctgggttcgaatccagggttccacacaaaatgtcctcacagccaaaccactatgttgcaacaa 52017763  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 29234305 - 29234230
Alignment:
Q  19 gaatgtggtgacctgggtttgaacccgaaatttcacataaaatgtcctcacaaccaaaccactaggttgtaacaac 94  Q
    ||||||||||||| || |||||||  || ||| ||| |||||| ||||||||||||||| || | |||||||||||    
T  29234305 gaatgtggtgacccggatttgaacatgagattccacgtaaaatatcctcacaaccaaactaccatgttgtaacaac 29234230  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 35856735 - 35856781
Alignment:
Q  48 atttcacataaaatgtcctcacaaccaaaccactaggttgtaacaac 94  Q
    |||||||||||||| |  ||||| |||||||||||||||||||||||    
T  35856735 atttcacataaaatatgttcacagccaaaccactaggttgtaacaac 35856781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 25971087 - 25971128
Alignment:
Q  52 cacataaaatgtcctcacaaccaaaccactaggttgtaacaa 93  Q
    |||||||||| | |||||| ||||||||||||||||||||||    
T  25971087 cacataaaatattctcacagccaaaccactaggttgtaacaa 25971128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 32855987 - 32855950
Alignment:
Q  55 ataaaatgtcctcacaaccaaaccactaggttgtaaca 92  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  32855987 ataaaatgttctcacatccaaaccactaggttgtaaca 32855950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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