View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4326-Insertion-1 (Length: 286)
Name: NF4326-Insertion-1
Description: NF4326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4326-Insertion-1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 286
Target Start/End: Original strand, 42421944 - 42422223
Alignment:
| Q |
7 |
aattctccctccaagaacttgacatctatcaactaaacctctcaggaccaatcctcaactcctcaatccaactcactcttctctccaaaaatccaaacca |
106 |
Q |
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| T |
42421944 |
aattctccctccaagaacttgacatctatcaactaaacctctcaggaccaatcctcaactcctcaatccaactcactcttctctccaaaaatccaaacca |
42422043 |
T |
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| Q |
107 |
aaaagttagcatttactacgacgagtttcaagtttatgcaacttacaagaatcaacaaataactagtgattcatttgtgccacctttttaccaaggaaca |
206 |
Q |
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| T |
42422044 |
aaaagttagcatttactacgacgagtttcaagtttatgcaacttacaagaatcaacaaataactagtgattcatttgtgccacctttttaccaaggaaca |
42422143 |
T |
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| Q |
207 |
caagagagtaattttttatcatcttctttgattggaaatggtttacctgttgctccttccattagttatgaattgagtcg |
286 |
Q |
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| T |
42422144 |
caagagagtaattttttatcatcttctttgattggaaatggtttacctgttgctccttccattggttatgaattgagtcg |
42422223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 2237486 - 2237444
Alignment:
| Q |
244 |
atggtttacctgttgctccttccattagttatgaattgagtcg |
286 |
Q |
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| T |
2237486 |
atggtttacctgttgttccttccatttgttgtgaattgagtcg |
2237444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 34807340 - 34807299
Alignment:
| Q |
244 |
atggtttacctgttgctccttccattagttatgaattgagtc |
285 |
Q |
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| T |
34807340 |
atggtttacctgttgttccttccatttgttgtgaattgagtc |
34807299 |
T |
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