View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4326-Insertion-12 (Length: 254)
Name: NF4326-Insertion-12
Description: NF4326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4326-Insertion-12 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 254
Target Start/End: Complemental strand, 11963035 - 11962786
Alignment:
| Q |
6 |
tgatgatgtcaacatattgtcagagaaatcaaggatggtaagagaattggaaaagttagaatgagaatggaacaaagacgcgacatcattatctatcaga |
105 |
Q |
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| T |
11963035 |
tgatgatgtcaacatattggaagagaaatcaaggatggtaagagaattggaaaagttagaatgagaatgaaacaaagacgcgacatcattatctatcaga |
11962936 |
T |
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| Q |
106 |
ccaaattcaactaacctcaactctcttaagtttggaaaaaacttcatgattgtttgcaagtgagaagagacaaaactaagatatagtcctctcagggaaa |
205 |
Q |
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| T |
11962935 |
ccaaattcaactaacctcaactctcttaagtttggaaaaaacttcatgattgtttgcaagtgagaagagtcaaaactaagatacattcctctcagggaaa |
11962836 |
T |
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| Q |
206 |
gacttgttaaagaagagagtgtaga-aaccattttatattatcatttgta |
254 |
Q |
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| T |
11962835 |
gacttgttaaagaagacagtgtatacaaccattttatattatcatttgta |
11962786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 11852510 - 11852765
Alignment:
| Q |
6 |
tgatgatgtcaacatattgtcagagaaatcaaggatggtaagagaattggaaaagttagaatgagaatggaacaaagacgcgacatcattatctatcaga |
105 |
Q |
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| T |
11852510 |
tgatgatgtcaacatattggcagagaaatcaaggatggtaagagaattggaaaagttagaatgagaatgaaacaaagacacgacatcagtatctataaga |
11852609 |
T |
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| Q |
106 |
ccaaattcaactaacctcaactctcttaagtttggaaaaaacttcatgattgtttgc------aagtgagaagagacaaaactaagatatagtcctctca |
199 |
Q |
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| T |
11852610 |
ccaaaatcaactaacctcaactctcttaagtttggaataaacttcatgattgtttgctgcaagtagtgaaaaaagacaaacctacgatattgtccgctga |
11852709 |
T |
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| Q |
200 |
gggaaagacttgttaaagaagagagtgtaga-aaccattttatattatcatttgta |
254 |
Q |
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| T |
11852710 |
gggaaagacttgttaaagaagagagtgtagacaaccattttatattatcatttgta |
11852765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 11833246 - 11833492
Alignment:
| Q |
6 |
tgatgatgtcaacatattgtcagagaaatcaaggatggtaagagaattggaaaagttagaatgagaatggaacaaagacgcgacatcattatctatcaga |
105 |
Q |
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| T |
11833246 |
tgatgatgtcaacatattgtcagagaaatcaaggatggtaagagaattggaaaagttagaatgagaatgaaacaaagacacgacatcagtatctataaga |
11833345 |
T |
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| Q |
106 |
ccaaattcaactaacctcaactctcttaagtttggaaaaaacttcatgattgtttgca------agtgagaagagacaaaactaagatatagtcctctca |
199 |
Q |
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| T |
11833346 |
ccaaaatcaactaacctcaactctcttaagtttggaataaacttcatgattgtttggagcaagtagtgaaaaaagacaaacctacgatattgtccgctca |
11833445 |
T |
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| Q |
200 |
gggaaagacttgttaaagaagagagtgtaga-aaccattttatatta |
245 |
Q |
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| T |
11833446 |
gggaaagacttgttaaagaagagagtgtagacaaccactttatatta |
11833492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 11928745 - 11928610
Alignment:
| Q |
6 |
tgatgatgtcaacatattgtcagagaaatcaaggatggtaagagaattggaaaagttagaatgagaatggaacaaagacgcgacatcattatctatcaga |
105 |
Q |
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|||| ||||||||||||||| ||| ||||||||||||||| ||||| |||| |||| |||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
11928745 |
tgataatgtcaacatattgttagaaaaatcaaggatggtaggagaaatggacaagtaagaatgagaatgaaacaaagacgcgacatcattatctagaaga |
11928646 |
T |
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| Q |
106 |
ccaaattcaactaacctcaactctcttaagtttgga |
141 |
Q |
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| T |
11928645 |
ccaaattgaaccaatctcaactctcataagtttgga |
11928610 |
T |
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