View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4326-Insertion-13 (Length: 113)
Name: NF4326-Insertion-13
Description: NF4326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4326-Insertion-13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 1e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 48695326 - 48695214
Alignment:
| Q |
1 |
agttgaagaaccaaatctccagatgacaacatgacatccaaaagctgtctttgctccttatcaagttttgtggtggaaagaatttcagccatgctaacaa |
100 |
Q |
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| T |
48695326 |
agttgaagaaccaaatctccagatgacaacatgacatccaaaagctgtctttgctccttatcaagttttgtggtggaaagaatttcagccatgctaacaa |
48695227 |
T |
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| Q |
101 |
caccagaaagtgg |
113 |
Q |
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| T |
48695226 |
caccagaaagtgg |
48695214 |
T |
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Target: chr1 (Bit Score: 82; Significance: 3e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 3e-39
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 3455077 - 3455186
Alignment:
| Q |
1 |
agttgaagaaccaaatctccagatgacaacatgacatccaaaagctgtctttgctccttatcaagttttgtggtggaaagaatttcagccatgctaacaa |
100 |
Q |
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|||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||||||||||||||||| |
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| T |
3455077 |
agttgaagaaccaaatctcctgaagataacatgacatccaaaagctgtctttgctctttatcaagttttgttgtcgtaagaatttcagccatgctaacaa |
3455176 |
T |
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| Q |
101 |
caccagaaag |
110 |
Q |
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| T |
3455177 |
caccagaaag |
3455186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 3479443 - 3479554
Alignment:
| Q |
2 |
gttgaagaaccaaatctccagatgacaacatgacatccaaaagctgtctttgctccttatcaagttttgtggtggaaagaatttcagccatgctaacaac |
101 |
Q |
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||||||||||||||||||| || || | |||| |||| || |||||||||||||| | ||||||||||| || | |||||||| |||||||||||||| |
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| T |
3479443 |
gttgaagaaccaaatctcctgacgatatcatggcatctaagagctgtctttgctctctgtcaagttttgttgtagtaagaattttggccatgctaacaac |
3479542 |
T |
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| Q |
102 |
accagaaagtgg |
113 |
Q |
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| T |
3479543 |
atcagaaagtgg |
3479554 |
T |
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