View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4326-Insertion-17 (Length: 71)

Name: NF4326-Insertion-17
Description: NF4326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4326-Insertion-17
NF4326-Insertion-17
[»] chr1 (3 HSPs)
chr1 (5-71)||(25590199-25590265)
chr1 (5-68)||(44540738-44540801)
chr1 (5-68)||(50780635-50780698)
[»] chr5 (1 HSPs)
chr5 (5-68)||(22664178-22664241)
[»] chr7 (4 HSPs)
chr7 (5-71)||(8266541-8266607)
chr7 (5-68)||(43087811-43087874)
chr7 (5-68)||(293867-293930)
chr7 (5-68)||(35894954-35895017)
[»] chr2 (2 HSPs)
chr2 (5-68)||(296434-296497)
chr2 (5-68)||(29961030-29961093)
[»] chr8 (2 HSPs)
chr8 (5-68)||(37186168-37186231)
chr8 (5-68)||(37790490-37790553)
[»] chr4 (2 HSPs)
chr4 (5-68)||(5725221-5725284)
chr4 (5-71)||(25170893-25170961)
[»] chr3 (2 HSPs)
chr3 (5-68)||(11748196-11748259)
chr3 (5-68)||(18648991-18649054)


Alignment Details
Target: chr1 (Bit Score: 59; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 25590265 - 25590199
Alignment:
Q  5 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggagga 71  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25590265 gagaaaaagtgaatcaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggagga 25590199  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-17
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 44540801 - 44540738
Alignment:
Q  5 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatgga 68  Q
    ||||||||||||||||||||||||||||  |||||||||| |||||||| || |||||||||||    
T  44540801 gagaaaaggtgaaacaagtcaagttgcaatcatatagaaggaagtatgaaatgatgcaaatgga 44540738  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 50780698 - 50780635
Alignment:
Q  5 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatgga 68  Q
    ||||||||||||||||||||||| ||||  |||||||||| |||||||| || |||||||||||    
T  50780698 gagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtatgaaatgatgcaaatgga 50780635  T

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Target: chr5 (Bit Score: 44; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-17
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 22664241 - 22664178
Alignment:
Q  5 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatgga 68  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||  ||||||||||||||||||||    
T  22664241 gagaaaaagtgaaacaagtaaagttgcagtcatatagaagaagatatgagattatgcaaatgga 22664178  T

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Target: chr7 (Bit Score: 43; Significance: 3e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 8266541 - 8266607
Alignment:
Q  5 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggagga 71  Q
    |||||||||||||||| ||||||||| || | ||||||||||||||| |||| ||||||||||||||    
T  8266541 gagaaaaggtgaaacatgtcaagttgtagtcttatagaagaaagtatcagatgatgcaaatggagga 8266607  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 43087811 - 43087874
Alignment:
Q  5 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatgga 68  Q
    ||||||||||||||||||||||| ||||  |||||||||| |||||||| || |||||||||||    
T  43087811 gagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtatgaaatgatgcaaatgga 43087874  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 293867 - 293930
Alignment:
Q  5 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatgga 68  Q
    ||||||| ||||||||||||||| ||||| |||||||||| |||||||| || ||||| |||||    
T  293867 gagaaaaagtgaaacaagtcaagctgcagtcatatagaaggaagtatgaaatgatgcagatgga 293930  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 35894954 - 35895017
Alignment:
Q  5 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatgga 68  Q
    ||||||||||||||||||| ||| ||||  |||||||||| |||||||| || |||||||||||    
T  35894954 gagaaaaggtgaaacaagttaagctgcaatcatatagaaggaagtatgaaatgatgcaaatgga 35895017  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 296434 - 296497
Alignment:
Q  5 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatgga 68  Q
    ||||||||||||||||||||||| ||||  |||||||||| |||||||| || |||||||||||    
T  296434 gagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtatgaaatgatgcaaatgga 296497  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 29961030 - 29961093
Alignment:
Q  5 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatgga 68  Q
    ||||||||||||||||||||||| ||||  |||||||||| |||||||| || |||||||||||    
T  29961030 gagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtatgaaatgatgcaaatgga 29961093  T

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Target: chr8 (Bit Score: 36; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 37186231 - 37186168
Alignment:
Q  5 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatgga 68  Q
    |||||||||| |||||||||||| ||||  |||||||||| |||||||| || |||||||||||    
T  37186231 gagaaaaggttaaacaagtcaagctgcaatcatatagaaggaagtatgaaatgatgcaaatgga 37186168  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 37790553 - 37790490
Alignment:
Q  5 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatgga 68  Q
    ||||||||||||||||||||||| ||||   ||||||||| |||||||| || ||||| |||||    
T  37790553 gagaaaaggtgaaacaagtcaagctgcaattatatagaaggaagtatgaaatgatgcatatgga 37790490  T

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Target: chr4 (Bit Score: 36; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 5725284 - 5725221
Alignment:
Q  5 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatgga 68  Q
    ||||||||||||||||||||||| ||||  |||||||||| |||||| | || |||||||||||    
T  5725284 gagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtataaaatgatgcaaatgga 5725221  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 25170893 - 25170961
Alignment:
Q  5 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaaag--tatgagattatgcaaatggagga 71  Q
    |||||||  |||||||||||| ||||| | ||||||||||||||  |||||||| ||||||||||||||    
T  25170893 gagaaaaaatgaaacaagtcatgttgctgtcatatagaagaaagtatatgagatgatgcaaatggagga 25170961  T

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Target: chr3 (Bit Score: 36; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 11748259 - 11748196
Alignment:
Q  5 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatgga 68  Q
    ||||||||||||||||||||||| ||||  |||||||||| |||||||| |  |||||||||||    
T  11748259 gagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtatgaaaggatgcaaatgga 11748196  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 18649054 - 18648991
Alignment:
Q  5 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatgga 68  Q
    ||||||||||||||||||||||| ||||  |||||||||| |||||| | || |||||||||||    
T  18649054 gagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtattaaatgatgcaaatgga 18648991  T

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