View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4326-Insertion-18 (Length: 114)

Name: NF4326-Insertion-18
Description: NF4326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4326-Insertion-18
NF4326-Insertion-18
[»] chr3 (12 HSPs)
chr3 (10-114)||(10517061-10517165)
chr3 (10-114)||(11782371-11782475)
chr3 (10-78)||(10500150-10500218)
chr3 (14-63)||(10541551-10541600)
chr3 (10-67)||(11768807-11768864)
chr3 (10-63)||(10526932-10526985)
chr3 (10-64)||(8860859-8860913)
chr3 (10-63)||(11149297-11149350)
chr3 (14-64)||(10376287-10376337)
chr3 (10-63)||(10888879-10888932)
chr3 (10-63)||(11160460-11160513)
chr3 (10-49)||(10434501-10434540)
[»] chr4 (1 HSPs)
chr4 (10-114)||(17853312-17853416)
[»] chr2 (1 HSPs)
chr2 (10-49)||(26906470-26906509)
[»] chr6 (1 HSPs)
chr6 (10-64)||(31680181-31680235)
[»] chr8 (1 HSPs)
chr8 (10-63)||(11484590-11484643)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 9e-46; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 9e-46
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 10517061 - 10517165
Alignment:
Q  10 caaacaatggcttgatgacttgaaagacgcaatctttgattctgaagatttgctcgatttcataagctaccatgtcctgaggtccacggtggagaaaacg 109  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  10517061 caaacaatggcttgatgacttgaaagatgcaatctttgattctgaagatttgctagatttaataagctaccatgtcctgaggtccacggtggagaaaacg 10517160  T
Q  110 ccagt 114  Q
    |||||    
T  10517161 ccagt 10517165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 8e-34
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 11782475 - 11782371
Alignment:
Q  10 caaacaatggcttgatgacttgaaagacgcaatctttgattctgaagatttgctcgatttcataagctaccatgtcctgaggtccacggtggagaaaacg 109  Q
    ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| || || ||||||||||||||||||| ||||||||||||||||||     
T  11782475 caaacaatggcttgatgacttgaaagatgcaatatttgatgctgaagatttgcttgacttaataagctaccatgtcctgaagtccacggtggagaaaaca 11782376  T
Q  110 ccagt 114  Q
    |||||    
T  11782375 ccagt 11782371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 7e-22
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 10500150 - 10500218
Alignment:
Q  10 caaacaatggcttgatgacttgaaagacgcaatctttgattctgaagatttgctcgatttcataagcta 78  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || ||||||||    
T  10500150 caaacaatggcttgatgacttgaaagacacaatctttgatgctgaagatttgctcgacttaataagcta 10500218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 10541551 - 10541600
Alignment:
Q  14 caatggcttgatgacttgaaagacgcaatctttgattctgaagatttgct 63  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  10541551 caatggcttgatgacttgaaagatgcaatctttgatgctgaagatttgct 10541600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 11768807 - 11768864
Alignment:
Q  10 caaacaatggcttgatgacttgaaagacgcaatctttgattctgaagatttgctcgat 67  Q
    |||||||||||||||||||||||||||||| ||||||||| |||| ||||| ||||||    
T  11768807 caaacaatggcttgatgacttgaaagacgctatctttgatgctgaggatttactcgat 11768864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 10526932 - 10526985
Alignment:
Q  10 caaacaatggcttgatgacttgaaagacgcaatctttgattctgaagatttgct 63  Q
    ||||||||||||| ||||||||||||| ||||| |||||| |||||||||||||    
T  10526932 caaacaatggcttcatgacttgaaagatgcaatatttgatgctgaagatttgct 10526985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 8860859 - 8860913
Alignment:
Q  10 caaacaatggcttgatgacttgaaagacgcaatctttgattctgaagatttgctc 64  Q
    ||||||||||||||||||||||||||| ||  |||||||| |||| |||||||||    
T  8860859 caaacaatggcttgatgacttgaaagatgctctctttgatgctgaggatttgctc 8860913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 11149350 - 11149297
Alignment:
Q  10 caaacaatggcttgatgacttgaaagacgcaatctttgattctgaagatttgct 63  Q
    ||||||||||||||||||||||||||| || ||||||||| | || ||||||||    
T  11149350 caaacaatggcttgatgacttgaaagatgctatctttgatgccgaggatttgct 11149297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 10376337 - 10376287
Alignment:
Q  14 caatggcttgatgacttgaaagacgcaatctttgattctgaagatttgctc 64  Q
    ||||||||||||||||||||||| || ||||||||| |||| || ||||||    
T  10376337 caatggcttgatgacttgaaagatgctatctttgatgctgaggacttgctc 10376287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 10888879 - 10888932
Alignment:
Q  10 caaacaatggcttgatgacttgaaagacgcaatctttgattctgaagatttgct 63  Q
    ||||||||||||||||||||||||||| ||  |||||||| | || ||||||||    
T  10888879 caaacaatggcttgatgacttgaaagatgctgtctttgatgcggaggatttgct 10888932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 11160513 - 11160460
Alignment:
Q  10 caaacaatggcttgatgacttgaaagacgcaatctttgattctgaagatttgct 63  Q
    ||||||||||||||||||||||||||| ||  |||||||| | || ||||||||    
T  11160513 caaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgct 11160460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 10434540 - 10434501
Alignment:
Q  10 caaacaatggcttgatgacttgaaagacgcaatctttgat 49  Q
    ||||||||||||||||||||||||||| ||  ||||||||    
T  10434540 caaacaatggcttgatgacttgaaagatgctgtctttgat 10434501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 17853416 - 17853312
Alignment:
Q  10 caaacaatggcttgatgacttgaaagacgcaatctttgattctgaagatttgctcgatttcataagctaccatgtcctgaggtccacggtggagaaaacg 109  Q
    |||||||||||||||||| ||||||||||| ||||||||  | |||||| |||||||||| || | |||| ||| | |||||| || ||||||||||||     
T  17853416 caaacaatggcttgatgatttgaaagacgctatctttgacacggaagatctgctcgatttaatcaactacgatgccttgaggtgcaaggtggagaaaaca 17853317  T
Q  110 ccagt 114  Q
    |||||    
T  17853316 ccagt 17853312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 26906470 - 26906509
Alignment:
Q  10 caaacaatggcttgatgacttgaaagacgcaatctttgat 49  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  26906470 caaacaatggcttgatgacttgaaagatgctatctttgat 26906509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 31680235 - 31680181
Alignment:
Q  10 caaacaatggcttgatgacttgaaagacgcaatctttgattctgaagatttgctc 64  Q
    |||||||||||||||||| |||||||| ||||| | |||| |||| |||||||||    
T  31680235 caaacaatggcttgatgagttgaaagatgcaatatatgatgctgaggatttgctc 31680181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 11484590 - 11484643
Alignment:
Q  10 caaacaatggcttgatgacttgaaagacgcaatctttgattctgaagatttgct 63  Q
    ||||||||||||||||   |||||||| |||||||||||| |||| ||||||||    
T  11484590 caaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgct 11484643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University