View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4326-Insertion-6 (Length: 37)

Name: NF4326-Insertion-6
Description: NF4326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4326-Insertion-6
NF4326-Insertion-6
[»] scaffold0187 (2 HSPs)
scaffold0187 (1-37)||(14178-14214)
scaffold0187 (1-37)||(24506-24542)
[»] scaffold0119 (1 HSPs)
scaffold0119 (1-37)||(759-795)
[»] scaffold0038 (1 HSPs)
scaffold0038 (1-37)||(112729-112765)
[»] chr8 (19 HSPs)
chr8 (1-37)||(2547070-2547106)
chr8 (1-37)||(11582840-11582876)
chr8 (1-37)||(31384738-31384774)
chr8 (1-37)||(36743473-36743509)
chr8 (1-37)||(42197425-42197461)
chr8 (1-35)||(29705436-29705470)
chr8 (1-37)||(2165953-2165989)
chr8 (1-37)||(5754977-5755013)
chr8 (1-37)||(9241626-9241662)
chr8 (1-37)||(26125709-26125745)
chr8 (1-37)||(29800940-29800976)
chr8 (1-37)||(30660732-30660768)
chr8 (1-37)||(42295269-42295305)
chr8 (1-37)||(45397390-45397426)
chr8 (1-32)||(3743845-3743876)
chr8 (4-37)||(1375619-1375652)
chr8 (4-37)||(40528624-40528657)
chr8 (1-37)||(20148834-20148870)
chr8 (1-37)||(30912552-30912588)
[»] chr7 (20 HSPs)
chr7 (1-37)||(5015469-5015505)
chr7 (1-37)||(5810914-5810950)
chr7 (1-37)||(16180347-16180383)
chr7 (1-37)||(24001002-24001038)
chr7 (1-37)||(42538421-42538457)
chr7 (1-37)||(43343614-43343650)
chr7 (1-37)||(44416924-44416960)
chr7 (1-37)||(4638189-4638225)
chr7 (1-37)||(9216375-9216411)
chr7 (1-37)||(10573823-10573859)
chr7 (1-37)||(27393250-27393286)
chr7 (1-37)||(35069795-35069831)
chr7 (1-37)||(42972926-42972962)
chr7 (4-34)||(41861753-41861783)
chr7 (1-37)||(24280586-24280622)
chr7 (1-37)||(26898392-26898428)
chr7 (1-37)||(32029807-32029843)
chr7 (1-37)||(38160569-38160605)
chr7 (1-37)||(44326252-44326288)
chr7 (1-37)||(45326094-45326130)
[»] chr6 (13 HSPs)
chr6 (1-37)||(7292821-7292857)
chr6 (1-37)||(9698323-9698359)
chr6 (1-37)||(13743211-13743247)
chr6 (1-37)||(13748711-13748747)
chr6 (1-37)||(21280003-21280039)
chr6 (1-37)||(26669999-26670035)
chr6 (1-34)||(26466873-26466906)
chr6 (1-37)||(24203977-24204013)
chr6 (1-37)||(7273325-7273361)
chr6 (1-37)||(7367623-7367659)
chr6 (1-37)||(21293667-21293703)
chr6 (1-37)||(30736056-30736092)
chr6 (1-32)||(30014417-30014448)
[»] chr5 (8 HSPs)
chr5 (1-37)||(2614639-2614675)
chr5 (1-37)||(18034056-18034092)
chr5 (1-37)||(22512379-22512415)
chr5 (1-37)||(33801543-33801579)
chr5 (1-37)||(41334653-41334689)
chr5 (1-37)||(5257069-5257105)
chr5 (1-37)||(7617207-7617243)
chr5 (1-37)||(39122423-39122459)
[»] chr4 (22 HSPs)
chr4 (1-37)||(35017806-35017842)
chr4 (1-37)||(39631175-39631211)
chr4 (1-35)||(33703215-33703249)
chr4 (1-35)||(43949793-43949827)
chr4 (1-34)||(45490306-45490339)
chr4 (1-37)||(23036054-23036090)
chr4 (1-37)||(27893832-27893868)
chr4 (1-37)||(28982812-28982848)
chr4 (1-37)||(31680976-31681012)
chr4 (1-37)||(43514676-43514712)
chr4 (1-37)||(43735816-43735852)
chr4 (1-37)||(1771256-1771292)
chr4 (1-37)||(12497030-12497066)
chr4 (1-37)||(23204768-23204804)
chr4 (1-37)||(25051767-25051803)
chr4 (1-37)||(27550383-27550419)
chr4 (1-37)||(27864638-27864674)
chr4 (1-37)||(28988547-28988583)
chr4 (1-37)||(41848045-41848081)
chr4 (5-37)||(46412459-46412491)
chr4 (1-37)||(55966336-55966372)
chr4 (1-32)||(27316708-27316739)
[»] chr3 (16 HSPs)
chr3 (1-37)||(25413755-25413791)
chr3 (1-37)||(36150204-36150240)
chr3 (1-37)||(40808939-40808975)
chr3 (1-37)||(42394409-42394445)
chr3 (1-37)||(46941127-46941163)
chr3 (1-37)||(47191016-47191052)
chr3 (1-37)||(53581848-53581884)
chr3 (1-37)||(54237170-54237206)
chr3 (1-37)||(54246138-54246174)
chr3 (1-36)||(40480823-40480858)
chr3 (1-37)||(24688392-24688428)
chr3 (1-37)||(51249382-51249418)
chr3 (1-32)||(52629902-52629933)
chr3 (1-37)||(27748637-27748673)
chr3 (1-37)||(42100762-42100798)
chr3 (1-37)||(45126918-45126954)
[»] chr2 (10 HSPs)
chr2 (1-37)||(1750488-1750524)
chr2 (1-37)||(4764716-4764752)
chr2 (1-37)||(19047231-19047267)
chr2 (1-37)||(30838706-30838742)
chr2 (1-37)||(12302243-12302279)
chr2 (1-34)||(34817769-34817802)
chr2 (1-37)||(13780725-13780761)
chr2 (1-37)||(42849849-42849884)
chr2 (1-37)||(43335753-43335789)
chr2 (1-37)||(43490391-43490427)
[»] chr1 (11 HSPs)
chr1 (1-37)||(4401402-4401438)
chr1 (1-37)||(5489850-5489886)
chr1 (1-37)||(7447899-7447935)
chr1 (1-37)||(43571076-43571112)
chr1 (1-37)||(48498952-48498988)
chr1 (4-37)||(23989513-23989546)
chr1 (1-37)||(750295-750331)
chr1 (7-37)||(24769489-24769519)
chr1 (4-37)||(4888120-4888153)
chr1 (1-37)||(2497552-2497588)
chr1 (1-37)||(37814852-37814888)
[»] scaffold0385 (1 HSPs)
scaffold0385 (1-31)||(11325-11355)
[»] scaffold0157 (1 HSPs)
scaffold0157 (1-37)||(23411-23447)


Alignment Details
Target: scaffold0187 (Bit Score: 37; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14214 - 14178
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  14214 ttcatctcacaaccacactttatcttctatttgtgtg 14178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24542 - 24506
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  24542 ttcatctcacaaccacactttatcttctatttgtgtg 24506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 37; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 759 - 795
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  759 ttcatctcacaaccacactttatcttctatttgtgtg 795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 37; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 112729 - 112765
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  112729 ttcatctcacaaccacactttatcttctatttgtgtg 112765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.0000000000005; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2547070 - 2547106
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  2547070 ttcatctcacaaccacactttatcttctatttgtgtg 2547106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11582840 - 11582876
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  11582840 ttcatctcacaaccacactttatcttctatttgtgtg 11582876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31384738 - 31384774
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  31384738 ttcatctcacaaccacactttatcttctatttgtgtg 31384774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36743509 - 36743473
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  36743509 ttcatctcacaaccacactttatcttctatttgtgtg 36743473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42197461 - 42197425
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  42197461 ttcatctcacaaccacactttatcttctatttgtgtg 42197425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29705436 - 29705470
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  29705436 ttcatctcacaaccacactttatcttctatttgtg 29705470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2165989 - 2165953
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||| |||||||||||||||||||||||||||    
T  2165989 ttcatctcataaccacactttatcttctatttgtgtg 2165953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5754977 - 5755013
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  5754977 ttcatctcacaaccacactttatcttctatttatgtg 5755013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9241626 - 9241662
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  9241626 ttcatctcacaaccacactttatcttctatttatgtg 9241662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26125709 - 26125745
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  26125709 ttcatctcacaaccacactttatcttctatttatgtg 26125745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29800976 - 29800940
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  29800976 ttcatctcacaaccacactttatcttctatttatgtg 29800940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30660768 - 30660732
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||| |||||||||||||||||||||||||||||    
T  30660768 ttcatcttacaaccacactttatcttctatttgtgtg 30660732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 42295269 - 42295305
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  42295269 ttcatctcacaaccacactttatcttctatttatgtg 42295305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 45397390 - 45397426
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  45397390 ttcatctcacaaccacaatttatcttctatttgtgtg 45397426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 3743845 - 3743876
Alignment:
Q  1 ttcatctcacaaccacactttatcttctattt 32  Q
    ||||||||||||||||||||||||||||||||    
T  3743845 ttcatctcacaaccacactttatcttctattt 3743876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 1375619 - 1375652
Alignment:
Q  4 atctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||| |||||||||||||||||||||||    
T  1375619 atctcacaactacactttatcttctatttgtgtg 1375652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 40528657 - 40528624
Alignment:
Q  4 atctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||| |||||||||||||||    
T  40528657 atctcacaaccacactttctcttctatttgtgtg 40528624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20148834 - 20148870
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  20148834 ttcatctcacaaccacactttatcatctatttatgtg 20148870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30912588 - 30912552
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  30912588 ttcatctcacaaccgcaccttatcttctatttgtgtg 30912552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.0000000000005; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5015469 - 5015505
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  5015469 ttcatctcacaaccacactttatcttctatttgtgtg 5015505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5810950 - 5810914
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  5810950 ttcatctcacaaccacactttatcttctatttgtgtg 5810914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16180383 - 16180347
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  16180383 ttcatctcacaaccacactttatcttctatttgtgtg 16180347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24001038 - 24001002
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  24001038 ttcatctcacaaccacactttatcttctatttgtgtg 24001002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42538457 - 42538421
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  42538457 ttcatctcacaaccacactttatcttctatttgtgtg 42538421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43343650 - 43343614
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  43343650 ttcatctcacaaccacactttatcttctatttgtgtg 43343614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44416960 - 44416924
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  44416960 ttcatctcacaaccacactttatcttctatttgtgtg 44416924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4638225 - 4638189
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||||| |||||||||||||||||||||    
T  4638225 ttcatctcacaaccatactttatcttctatttgtgtg 4638189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9216375 - 9216411
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  9216375 ttcatctcacaaccacattttatcttctatttgtgtg 9216411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10573823 - 10573859
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  10573823 ttcatctcacaaccacactttatcttctatttatgtg 10573859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27393286 - 27393250
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  27393286 ttcatctcacaaccacactttatcttctatttatgtg 27393250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35069795 - 35069831
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  35069795 ttcatctcacaaccacactttatcttctatttatgtg 35069831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 42972926 - 42972962
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  42972926 ttcatctcacaaccacattttatcttctatttgtgtg 42972962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 41861753 - 41861783
Alignment:
Q  4 atctcacaaccacactttatcttctatttgt 34  Q
    |||||||||||||||||||||||||||||||    
T  41861753 atctcacaaccacactttatcttctatttgt 41861783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24280622 - 24280586
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||| |||||||| |||||||||||||||    
T  24280622 ttcatctcacaatcacactttctcttctatttgtgtg 24280586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26898428 - 26898392
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  26898428 ttcatcttacaaccacactttatattctatttgtgtg 26898392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32029843 - 32029807
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  32029843 ttcatctaacaaccacactttatcttctatttatgtg 32029807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38160605 - 38160569
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  38160605 ttcatctcacaactacactttatcttctatttatgtg 38160569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 44326252 - 44326288
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  44326252 ttcatctcacaaccacactttatcatctatttatgtg 44326288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 45326094 - 45326130
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  45326094 ttcatctcacaatcacactttatcttctatttatgtg 45326130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.0000000000005; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7292821 - 7292857
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  7292821 ttcatctcacaaccacactttatcttctatttgtgtg 7292857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9698359 - 9698323
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  9698359 ttcatctcacaaccacactttatcttctatttgtgtg 9698323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13743247 - 13743211
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  13743247 ttcatctcacaaccacactttatcttctatttgtgtg 13743211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13748747 - 13748711
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  13748747 ttcatctcacaaccacactttatcttctatttgtgtg 13748711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21280003 - 21280039
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  21280003 ttcatctcacaaccacactttatcttctatttgtgtg 21280039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26670035 - 26669999
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  26670035 ttcatctcacaaccacactttatcttctatttgtgtg 26669999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 26466873 - 26466906
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  26466873 ttcatctcacaaccacactttatcttctatttgt 26466906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24204013 - 24203977
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  24204013 ttcatctcacaaccacactttatattctatttgtgtg 24203977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7273361 - 7273325
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  7273361 ttcatctcacaatcacactttatcttctatttatgtg 7273325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7367623 - 7367659
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  7367623 ttcatctcacaaccacactttattttctatttatgtg 7367659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21293703 - 21293667
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  21293703 ttcatttcacaaccacactttatcttctatttatgtg 21293667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30736056 - 30736092
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  30736056 ttcatctcacaatcacactttatcttctatttatgtg 30736092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 28; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 30014417 - 30014448
Alignment:
Q  1 ttcatctcacaaccacactttatcttctattt 32  Q
    ||||||||||||||| ||||||||||||||||    
T  30014417 ttcatctcacaaccatactttatcttctattt 30014448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.0000000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2614675 - 2614639
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  2614675 ttcatctcacaaccacactttatcttctatttgtgtg 2614639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18034056 - 18034092
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  18034056 ttcatctcacaaccacactttatcttctatttgtgtg 18034092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22512379 - 22512415
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  22512379 ttcatctcacaaccacactttatcttctatttgtgtg 22512415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33801543 - 33801579
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  33801543 ttcatctcacaaccacactttatcttctatttgtgtg 33801579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41334689 - 41334653
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  41334689 ttcatctcacaaccacactttatcttctatttgtgtg 41334653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5257069 - 5257105
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  5257069 ttcatctcacaaccacactttatcttctatttatgtg 5257105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7617207 - 7617243
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  7617207 ttcatctcacaaccacactttatcttctatttatgtg 7617243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39122459 - 39122423
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||| |||||||||||||||||||||||    
T  39122459 ttcatctcacaactacactttatcttctatttgtgtg 39122423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.0000000000005; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35017806 - 35017842
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  35017806 ttcatctcacaaccacactttatcttctatttgtgtg 35017842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39631175 - 39631211
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  39631175 ttcatctcacaaccacactttatcttctatttgtgtg 39631211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 33703215 - 33703249
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  33703215 ttcatctcacaaccacactttatcttctatttgtg 33703249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 43949827 - 43949793
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  43949827 ttcatctcacaaccacactttatcttctatttgtg 43949793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 45490339 - 45490306
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  45490339 ttcatctcacaaccacactttatcttctatttgt 45490306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23036054 - 23036090
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  23036054 ttcatctcacaaccacactttatcttctatttatgtg 23036090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27893868 - 27893832
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  27893868 ttcatctcacaaccacactttatcttctatttatgtg 27893832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28982848 - 28982812
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||| ||||||||||||||||||||||    
T  28982848 ttcatctcacaaccgcactttatcttctatttgtgtg 28982812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31680976 - 31681012
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  31680976 ttcatctcacaaccacactttatcttctatttatgtg 31681012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43514712 - 43514676
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||| ||||||||||||||||||    
T  43514712 ttcatctcacaaccacaccttatcttctatttgtgtg 43514676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43735816 - 43735852
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||| ||||||||||||||||||||||||    
T  43735816 ttcatctcacaatcacactttatcttctatttgtgtg 43735852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1771292 - 1771256
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  1771292 ttcatctcacaaccacattttatcttctatttatgtg 1771256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12497030 - 12497066
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  12497030 ttcatcttacaatcacactttatcttctatttgtgtg 12497066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23204804 - 23204768
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  23204804 ttcatgtcacaaccacactttatcttctatttatgtg 23204768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25051767 - 25051803
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  25051767 ttcatctcacaatcacactttatcttctatttatgtg 25051803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27550383 - 27550419
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  27550383 ttcatcttacaaccacactttatcttctatttatgtg 27550419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27864638 - 27864674
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  27864638 ttcatctcacaaccacactttattttctatttatgtg 27864674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28988547 - 28988583
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  28988547 ttcatctcataaccacactttctcttctatttgtgtg 28988583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 41848045 - 41848081
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||| |||||||||||||| |||||||||||||||    
T  41848045 ttcatcgcacaaccacactttctcttctatttgtgtg 41848081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 46412491 - 46412459
Alignment:
Q  5 tctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||| ||||    
T  46412491 tctcacaaccacactttatcttctatttatgtg 46412459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 55966372 - 55966336
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  55966372 ttcatctcacaaccacaatttatcttctatttatgtg 55966336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 28; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 27316739 - 27316708
Alignment:
Q  1 ttcatctcacaaccacactttatcttctattt 32  Q
    ||||||||| ||||||||||||||||||||||    
T  27316739 ttcatctcataaccacactttatcttctattt 27316708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.0000000000005; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25413755 - 25413791
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  25413755 ttcatctcacaaccacactttatcttctatttgtgtg 25413791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36150204 - 36150240
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  36150204 ttcatctcacaaccacactttatcttctatttgtgtg 36150240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40808939 - 40808975
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  40808939 ttcatctcacaaccacactttatcttctatttgtgtg 40808975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42394445 - 42394409
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  42394445 ttcatctcacaaccacactttatcttctatttgtgtg 42394409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 46941127 - 46941163
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  46941127 ttcatctcacaaccacactttatcttctatttgtgtg 46941163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 47191052 - 47191016
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  47191052 ttcatctcacaaccacactttatcttctatttgtgtg 47191016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 53581884 - 53581848
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  53581884 ttcatctcacaaccacactttatcttctatttgtgtg 53581848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 54237170 - 54237206
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  54237170 ttcatctcacaaccacactttatcttctatttgtgtg 54237206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 54246174 - 54246138
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  54246174 ttcatctcacaaccacactttatcttctatttgtgtg 54246138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 40480823 - 40480858
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  40480823 ttcatctcacaaccacactttatcttctatttgtgt 40480858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24688428 - 24688392
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  24688428 ttcatctcacaaccacactttatcttctatttatgtg 24688392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 51249382 - 51249418
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||||||||||| |||||||||||||||    
T  51249382 ttcatctcacaaccacactttctcttctatttgtgtg 51249418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 52629902 - 52629933
Alignment:
Q  1 ttcatctcacaaccacactttatcttctattt 32  Q
    ||||||||||||||||||||||||||||||||    
T  52629902 ttcatctcacaaccacactttatcttctattt 52629933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27748637 - 27748673
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||| | |||||||||||||||||||||    
T  27748637 ttcatctcacaacaatactttatcttctatttgtgtg 27748673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 42100762 - 42100798
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  42100762 ttcatctcacaaccacattttatcttttatttgtgtg 42100798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45126954 - 45126918
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  45126954 ttcatctcacaaccacactttattttctatttatgtg 45126918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.0000000000005; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1750488 - 1750524
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  1750488 ttcatctcacaaccacactttatcttctatttgtgtg 1750524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4764752 - 4764716
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  4764752 ttcatctcacaaccacactttatcttctatttgtgtg 4764716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19047231 - 19047267
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  19047231 ttcatctcacaaccacactttatcttctatttgtgtg 19047267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30838706 - 30838742
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  30838706 ttcatctcacaaccacactttatcttctatttgtgtg 30838742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12302279 - 12302243
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  12302279 ttcatctcacaaccacactttatcttctatttatgtg 12302243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 34817802 - 34817769
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgt 34  Q
    ||||||||||||||||||||| ||||||||||||    
T  34817802 ttcatctcacaaccacactttctcttctatttgt 34817769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13780761 - 13780725
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  13780761 ttcatctcacaaccacactttctcttctatttatgtg 13780725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42849884 - 42849849
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  42849884 ttcatctcacaaccacactttat-ttctatttgtgtg 42849849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43335789 - 43335753
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  43335789 ttcatctcacaactacactttatcttctatttatgtg 43335753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43490427 - 43490391
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  43490427 ttcatctcataaccacactttatcttctatttatgtg 43490391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.0000000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4401402 - 4401438
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  4401402 ttcatctcacaaccacactttatcttctatttgtgtg 4401438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5489850 - 5489886
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  5489850 ttcatctcacaaccacactttatcttctatttgtgtg 5489886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7447899 - 7447935
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  7447899 ttcatctcacaaccacactttatcttctatttgtgtg 7447935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43571112 - 43571076
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  43571112 ttcatctcacaaccacactttatcttctatttgtgtg 43571076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48498988 - 48498952
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  48498988 ttcatctcacaaccacactttatcttctatttgtgtg 48498952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 23989546 - 23989513
Alignment:
Q  4 atctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||||||||||||||||||||||||||||    
T  23989546 atctcacaaccacactttatcttctatttgtgtg 23989513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 750331 - 750295
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||||| |||||||||||||||||||||||||||    
T  750331 ttcatctcaaaaccacactttatcttctatttgtgtg 750295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 24769519 - 24769489
Alignment:
Q  7 tcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||||||||||    
T  24769519 tcacaaccacactttatcttctatttgtgtg 24769489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 4888120 - 4888153
Alignment:
Q  4 atctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||| |||||||||||||    
T  4888120 atctcacaaccacactttattttctatttgtgtg 4888153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2497588 - 2497552
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  2497588 ttcatctcacaaccacactttatcatctatttatgtg 2497552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37814852 - 37814888
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  37814852 ttcatttcacaaccacactttatcttctatttatgtg 37814888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 31; Significance: 0.000000002; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 11325 - 11355
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatt 31  Q
    |||||||||||||||||||||||||||||||    
T  11325 ttcatctcacaaccacactttatcttctatt 11355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 29; Significance: 0.00000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23447 - 23411
Alignment:
Q  1 ttcatctcacaaccacactttatcttctatttgtgtg 37  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  23447 ttcatcttacaatcacactttatcttctatttgtgtg 23411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University