View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4326_high_2 (Length: 477)
Name: NF4326_high_2
Description: NF4326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4326_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 473
Target Start/End: Original strand, 37187935 - 37188417
Alignment:
| Q |
17 |
aaaaaagacctaaaaataagttggactatcactattttataataactaggtagatccgaaaaataaaagatccatctatctatcaacatttcaacaacta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37187935 |
aaaaaagacctaaaaataagttggactatcactattttataataactaggtagatcccaaaaataaaagatccatctatctatcaacatttcaacaacta |
37188034 |
T |
|
| Q |
117 |
gtaaatagtatatgtaattgcttcagttgcaactacttagatgtgccaattcattattaggtgtcagaggtctccttcaccattgat------------- |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37188035 |
gtaaatagtatatgtaattgcttcagttgcaactactaagatgtgccaattcattattaggtgtcagaggtctccttcaccattgataatgataaggcat |
37188134 |
T |
|
| Q |
204 |
----agtaattgttaaatagcaaaaaatatgatttaaataaataaactagatgattatttaataaacatcagtaaatataatttaacatccagtgattaa |
299 |
Q |
| |
|
||||||||||||||||| |||||| | | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37188135 |
gtgcagtaattgttaaatagc-aaaaattttacttaaataaataaactagatgattatttaataaacattagtaaatataatttaacatccagtgattaa |
37188233 |
T |
|
| Q |
300 |
attaaatgttcacaaaattgagagatattaagatgaggttgccaatgttagt----------tagaattgacttgacataagggtcaatcatatagaaga |
389 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37188234 |
attaaatgttcacacaattcagagatattaagatgaggttggcaatgttagttagaattgtctagaattgacttgacataagggtcaatcatatagaaga |
37188333 |
T |
|
| Q |
390 |
ctttcacttcaaaccaaaaattgttagtaatggtttagaatcatttttaccaatcaattcatttcagatccatttcatctctct |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37188334 |
ctttcacttcaaaccaaaaattgttagtaatggtttagaatcatttttaccaatcaattcatttcagatccatttcatttctct |
37188417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University