View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4326_low_1 (Length: 549)
Name: NF4326_low_1
Description: NF4326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4326_low_1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 218 - 549
Target Start/End: Complemental strand, 43367016 - 43366685
Alignment:
| Q |
218 |
tgatgcatacaccatcatcagtgaagagaaagaagacagacaagtccagaagactcatcggactccttcttgccagtttcctccgccgtcgtctcattca |
317 |
Q |
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| T |
43367016 |
tgatgcataaaccatcatcagtgaagagaaagaagacagacaagtccagaagactcatcggactccttctttccagtttcctccgccgtcgtctcattca |
43366917 |
T |
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| Q |
318 |
ccgcctcctcatttccgccatctccgtctgccttctccttcttttcatcatgctctctctcttcgctccttccccttttattgtaaatgctcttcatcct |
417 |
Q |
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| T |
43366916 |
tcgcctcctcatttcctccatctccgtctgccttctctttcttttcatcatgctctctctcttcgctccttccccttttattgtaaatgctcttcatcct |
43366817 |
T |
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| Q |
418 |
tctacttcaattacattcctcattccattctgctgctgtgtgtaactttgattgtatttcaggataatgatttggttaaatctcgtttagattctcatca |
517 |
Q |
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| T |
43366816 |
tctacttcaattacattcctcattccattttgctgctgtgtgtaactttgattgtatttcaggataatgatttggttaaatctcgtttagattctcatca |
43366717 |
T |
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| Q |
518 |
gcaatccccatttcacattccggtaatcaaac |
549 |
Q |
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| T |
43366716 |
gcaatccccatttcacattccggtaatcaaac |
43366685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 43367239 - 43367042
Alignment:
| Q |
1 |
aactacaacacatattcatctcattcttcttctacctctaattccatgcatttgtcgtaactgtaattgcaaacacaattataa---------taatcaa |
91 |
Q |
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| T |
43367239 |
aactacaacacatattcatctcattcttcttctacctctaattccatgcatttgtcgtaactgtaattgcaaacacaattataataataataataatcaa |
43367140 |
T |
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| Q |
92 |
taacgtacattacattactccatgcattacatattaatatcatcactagctaacacatat--------atacatacaccaaactgtaattaatattcatt |
183 |
Q |
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| T |
43367139 |
taacgtacattacattactccatgcattacatat---tatcatcactagctaacacatatatacatacatacatacaccaaactgtaattaatattcatt |
43367043 |
T |
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