View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4326_low_2 (Length: 510)
Name: NF4326_low_2
Description: NF4326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4326_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Complemental strand, 4113596 - 4113134
Alignment:
| Q |
17 |
ctaacaaaataattgttgcaagctacaaacagttgttatggctccaggtcttcttctacacatagttcttactagcaactaaaatattacacagcttcta |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4113596 |
ctaacaaaataattgttgcaagctacaaacagttgttatggctccagttcttgttctacacatagttcttactagcaactaaaatattacacagcttcta |
4113497 |
T |
|
| Q |
117 |
cttctacctaggagaatacatttattcactattccagtaatgtaaaaacaacacgtagcttcataatagaccaaacatcatcatcttaatcaatggagaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4113496 |
cttctacctaggagaatacatttattcactattccagtaatgtaaaaacaacacgtagcttcataatagaccaaacatcatcatcttaatcaatggagaa |
4113397 |
T |
|
| Q |
217 |
gagtctgatcaaagtgccacacacctacaaccaacaaaaacaaatgttctgttaaacctcattcatttgattttcatattaccaatgttagtggaggaaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4113396 |
gagtctgatcaaagtgccacacacctacaaccaacaaaaacaaatgttctgttaaacctcattcatttgattttcatattaccaatggtagtggaggaaa |
4113297 |
T |
|
| Q |
317 |
tatacataccgtgaccctttccaactaatctcagttgagtcacatactctgatatcttcttaattgattcaacctgtgcaaggaaaatacatataagaac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4113296 |
tatacataccgtgaccctttccaactaatctcagttgagtcacatactctgatatcttcttaattgattcaacctgtgcaaggaaaatacatataagaac |
4113197 |
T |
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| Q |
417 |
aagaagaaaaaattggaaaatattgatacacttagtaacttttggatctaaagatttttcatgtca |
482 |
Q |
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| T |
4113196 |
a---agaaaaaattggaaaattttgatacacttagtaacttttggatctaaagatttttcatgtca |
4113134 |
T |
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Back To:
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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 316 - 392
Target Start/End: Original strand, 25792490 - 25792566
Alignment:
| Q |
316 |
atatacataccgtgaccctttccaactaatctcagttgagtcacatactctgatatcttcttaattgattcaacctg |
392 |
Q |
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||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25792490 |
atatacataccatgaccctttccaacccttctcaattgagacacatactctgatatcttcttaattgattcaacctg |
25792566 |
T |
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