View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4326_low_5 (Length: 436)
Name: NF4326_low_5
Description: NF4326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4326_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Original strand, 12558999 - 12559395
Alignment:
| Q |
19 |
agggtgatcaaattttcaatatttcatggaagtggaaggaagtgtaataagcaactcaaacaccaccatgctccaaagtgatgatgagttggatcttcga |
118 |
Q |
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| T |
12558999 |
agggtgatcaaattttcaatatttcatggaagtggaaggaagtgtaataagcaactcaaacagcaccatgctccaaagtgatgatgagttggatcttcga |
12559098 |
T |
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| Q |
119 |
cgagggccatggaccgtcgatgaagatcttgctctcatcaattacattgcaaatcatggtgaaggtcgatggaatactcttgctcgttcagctggtaatt |
218 |
Q |
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| T |
12559099 |
cgagggccatggaccgtcgatgaagatcttgctctcatcaattacattgcaaatcatggtgaaggtcgatggaatactcttgctcgttccgctggtaatt |
12559198 |
T |
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| Q |
219 |
cacaactcnnnnnnnnncttctactttttatggaagaataataagaac--tatatattatattatggaccactatagctgtttcatgattgcaattgttg |
316 |
Q |
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| T |
12559199 |
cacaact----ttttttcttctgctttttatggaagaataataagaactatatatattatattatggaccactatagctgtttcatgattgcaattgttg |
12559294 |
T |
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| Q |
317 |
atgggaaatcatatacttccactattttcttcaacgctatgcttgatttctagctagttaatttctataattatggtgtgaaagctccttcacttctcgt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12559295 |
atgggaaatcatatacttccactattttcttcaacgctatgcttgatttctagctagttaatttctataattatggtgtgaaagctccttcacttctcgt |
12559394 |
T |
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