View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4327-Insertion-2 (Length: 156)

Name: NF4327-Insertion-2
Description: NF4327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4327-Insertion-2
NF4327-Insertion-2
[»] chr3 (1 HSPs)
chr3 (5-156)||(36745673-36745824)
[»] chr8 (10 HSPs)
chr8 (9-78)||(6456366-6456435)
chr8 (11-78)||(6449899-6449966)
chr8 (11-92)||(6330988-6331069)
chr8 (11-99)||(6273640-6273728)
chr8 (11-99)||(6320519-6320607)
chr8 (22-99)||(6390068-6390145)
chr8 (5-99)||(6287891-6287985)
chr8 (28-66)||(6409353-6409391)
chr8 (14-75)||(6262455-6262516)
chr8 (11-66)||(7458203-7458258)
[»] chr5 (1 HSPs)
chr5 (11-79)||(9606050-9606118)
[»] chr1 (1 HSPs)
chr1 (9-51)||(47127110-47127152)
[»] chr2 (2 HSPs)
chr2 (11-46)||(42689403-42689438)
chr2 (14-78)||(42692378-42692442)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 8e-81; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 8e-81
Query Start/End: Original strand, 5 - 156
Target Start/End: Original strand, 36745673 - 36745824
Alignment:
Q  5 ataaaagactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgttagtttgtactacaagacagacgtgg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745673 ataaaagactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgttagtttgtactacaagacagacgtgg 36745772  T
Q  105 ccattcaaagagatgctgagctccaagagttttggaaagaagtcgtagagat 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745773 ccattcaaagagatgctgagctccaagagttttggaaagaagtcgtagagat 36745824  T

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Target: chr8 (Bit Score: 50; Significance: 6e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 6456435 - 6456366
Alignment:
Q  9 aagactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgt 78  Q
    |||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||  ||||||||||    
T  6456435 aagactacccttatgctgttgatggactagaaatatgggatgctattaaggcatgggttcaagactatgt 6456366  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 9e-19
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 6449966 - 6449899
Alignment:
Q  11 gactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgt 78  Q
    |||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||  ||||||||||    
T  6449966 gactacccttatgctgttgatggactagaaatatgggatgctattaaggcatgggtccaagactatgt 6449899  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 6331069 - 6330988
Alignment:
Q  11 gactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgttagtttgtactaca 92  Q
    |||||||||| ||||| ||||||| ||||||||||||||||||| ||| |||||||  |||| ||||| ||||| |||||||    
T  6331069 gactacccttatgctgctgatggactagagatatgggatgctatcaagtcatgggttgaagaatatgtgagtttctactaca 6330988  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 6273728 - 6273640
Alignment:
Q  11 gactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgttagtttgtactacaagacaga 99  Q
    |||||||||| ||||| |||||||||||||||||||| || ||||||| |||||||  |||| ||||| | ||| ||||||||| ||||    
T  6273728 gactacccttatgctgctgatggattagagatatgggctgttattaagtcatgggttgaagaatatgtgaatttctactacaagtcaga 6273640  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 6320607 - 6320519
Alignment:
Q  11 gactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgttagtttgtactacaagacaga 99  Q
    |||||||||| ||||| ||||||| ||||||||||||||||||| ||| |||||||  |||| ||||| | ||| ||||||||| ||||    
T  6320607 gactacccttatgctgctgatggactagagatatgggatgctatcaagtcatgggttgaagaatatgtgaatttctactacaagtcaga 6320519  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 6390145 - 6390068
Alignment:
Q  22 tgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgttagtttgtactacaagacaga 99  Q
    ||||||||||||| |||||||||||| |||||||||| |||||||  | || ||||| | ||| ||||||||| ||||    
T  6390145 tgctgttgatggactagagatatgggctgctattaagtcatgggttgatgaatatgtcaatttctactacaagtcaga 6390068  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 6287985 - 6287891
Alignment:
Q  5 ataaaagactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgttagtttgtactacaagacaga 99  Q
    |||||||| ||||||| ||||| |||||||||||||||||||   || |||||| |||||||  |||| |||||   ||| ||||||||| ||||    
T  6287985 ataaaagattacccttatgctgctgatggattagagatatggacagcaattaagtcatgggttgaagaatatgtgtatttctactacaagtcaga 6287891  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 6409391 - 6409353
Alignment:
Q  28 tgatggattagagatatgggatgctattaaggcatgggt 66  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  6409391 tgatggattagagatatgggctgctattaagtcatgggt 6409353  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 6262516 - 6262455
Alignment:
Q  14 tacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagacta 75  Q
    ||||||| ||||||||||||| | || || ||||||||||||||| |||||||  |||||||    
T  6262516 tacccttatgctgttgatggacttgacatttgggatgctattaagacatgggtacaagacta 6262455  T

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Target: chr8; HSP #10
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 7458258 - 7458203
Alignment:
Q  11 gactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggt 66  Q
    ||||| |||| ||||  ||||||| |||||||||||| |||||||||| |||||||    
T  7458258 gactatccttatgcttctgatggactagagatatgggctgctattaagtcatgggt 7458203  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 9606050 - 9606118
Alignment:
Q  11 gactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgtt 79  Q
    |||||||||| ||| ||||||||| | ||||||||||||||||||||| |||||||  |||||||||||    
T  9606050 gactacccttatgcagttgatggactcgagatatgggatgctattaagtcatgggtccaagactatgtt 9606118  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 47127152 - 47127110
Alignment:
Q  9 aagactacccttttgctgttgatggattagagatatgggatgc 51  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  47127152 aagactacccttttgctgttgatggattggaaatatgggatgc 47127110  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 42689403 - 42689438
Alignment:
Q  11 gactacccttttgctgttgatggattagagatatgg 46  Q
    |||||||||| |||||||||||||||||||||||||    
T  42689403 gactacccttatgctgttgatggattagagatatgg 42689438  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 42692442 - 42692378
Alignment:
Q  14 tacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgt 78  Q
    ||||||| ||||  |||||||||||||||||||| ||| || ||| |||||||  ||||||||||    
T  42692442 tacccttatgctcatgatggattagagatatgggctgcaataaagacatgggttcaagactatgt 42692378  T

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