View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4327_high_2 (Length: 247)
Name: NF4327_high_2
Description: NF4327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4327_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 13966480 - 13966250
Alignment:
| Q |
1 |
acccaaagctcctttgatacgatttttcatgttggtgaatgacgctttttcaagagttttgtgacatgtttctttgaattttattgattgacatagcata |
100 |
Q |
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| T |
13966480 |
acccaaagctcctttgatacgatttttcatgttgctgaatgacgctttttcaagagttttgtgacatgtttctttgaattttgttgattgacatagcata |
13966381 |
T |
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| Q |
101 |
tcaacannnnnnngcgagttagagatatgtgctttttgttctccatcgccaccctttgttaaactaactgcgacggcgcccaccatagccacaagaagta |
200 |
Q |
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| T |
13966380 |
tcaacatttttttgcgagttagagatatgtgctttttgttctccatcgccaccctttgttaaactaactgcgacgacgcctaccatagccacaagaagta |
13966281 |
T |
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| Q |
201 |
tgcaagatacaccaagaagtgcatgcctttt |
231 |
Q |
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| T |
13966280 |
tgcaagatacaccaagaagtgcatgcttttt |
13966250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 13976644 - 13976425
Alignment:
| Q |
5 |
aaagctcctttgatacgatttttcatgttggtgaatgacgctttttcaagagttttgtgacatgtttctttgaattttattgattgacatagcatatcaa |
104 |
Q |
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| T |
13976644 |
aaagctgctttgataagctctttcgtgtcggttgatgacgcgttttcaagacttttgtgacatgtttctttgtattctgttgattgacatagcatatcaa |
13976545 |
T |
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| Q |
105 |
cannnnnnngcgagttagagatatgtgctttttgttctccatcgccaccctttgttaaactaactgcgacggcgcccaccatagccacaagaagtatgca |
204 |
Q |
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| T |
13976544 |
catttttttgtgagtttgagatttgtgctgtttgttctttgtcgtcaccttttgttaaactaactgcgacggcgcccaccatagccacaagaagtatgca |
13976445 |
T |
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| Q |
205 |
agatacaccaagaagtgcat |
224 |
Q |
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| T |
13976444 |
agatacaccaagaagtgcat |
13976425 |
T |
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