View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4328-Insertion-16 (Length: 69)
Name: NF4328-Insertion-16
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4328-Insertion-16 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 57; Significance: 1e-24; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 19327973 - 19328041
Alignment:
| Q |
1 |
tgtttcacatagttcacacttgtgcgcagtggccaaacattgttttgaacgagttgaatggggcgtgtt |
69 |
Q |
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| T |
19327973 |
tgtttgacatagctcacacttgtgcgcagtggccaaacattgttttgaacgagttgaacggggcgtgtt |
19328041 |
T |
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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 19328129 - 19328189
Alignment:
| Q |
1 |
tgtttcacatagttcacacttgtgcgcagtggccaaacattgttttgaacgagttgaatgg |
61 |
Q |
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| T |
19328129 |
tgtttgacacagttcacactttggcgcagtggccaaacattgttttgaacgagctgaatgg |
19328189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 19329754 - 19329803
Alignment:
| Q |
11 |
agttcacacttgtgcgcagtggccaaacattgttttgaacgagttgaatg |
60 |
Q |
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| T |
19329754 |
agttcacactttggcgcagtggccaaacattgtcttaaacgagttgaatg |
19329803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 19328316 - 19328348
Alignment:
| Q |
29 |
gtggccaaacattgttttgaacgagttgaatgg |
61 |
Q |
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| T |
19328316 |
gtggccaaacattgttttgaacaagttgaatgg |
19328348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 61
Target Start/End: Original strand, 19328474 - 19328505
Alignment:
| Q |
30 |
tggccaaacattgttttgaacgagttgaatgg |
61 |
Q |
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| T |
19328474 |
tggccaaacattgttttgaacaagttgaatgg |
19328505 |
T |
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