View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4328-Insertion-17 (Length: 110)
Name: NF4328-Insertion-17
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4328-Insertion-17 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 2e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 2e-49
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 8342215 - 8342317
Alignment:
| Q |
8 |
aacagagcataatacctgaacgcgtgtctcttccagttcattatgttccacaattccctcttcaggttgtatttgtgcctattcctcaacacttccaatt |
107 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8342215 |
aacagagcataatacctgaacgcatgtctcttccagttcattatgttccacaattccctcttcaggttgtatttgtgcctattcctcaacacttccaatt |
8342314 |
T |
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| Q |
108 |
gaa |
110 |
Q |
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||| |
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| T |
8342315 |
gaa |
8342317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 8328576 - 8328678
Alignment:
| Q |
8 |
aacagagcataatacctgaacgcgtgtctcttccagttcattatgttccacaattccctcttcaggttgtatttgtgcctattcctcaacacttccaatt |
107 |
Q |
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|||||||| ||||||||||||| |||| |||||| ||| |||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8328576 |
aacagagcttaatacctgaacgtgtgtttcttccggttaattaagttctacaattccctcttcaggtcgtatttgtgcctattcctcaacacttccaatt |
8328675 |
T |
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| Q |
108 |
gaa |
110 |
Q |
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||| |
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| T |
8328676 |
gaa |
8328678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 9380303 - 9380405
Alignment:
| Q |
8 |
aacagagcataatacctgaacgcgtgtctcttccagttcattatgttccacaattccctcttcaggttgtatttgtgcctattcctcaacacttccaatt |
107 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9380303 |
aacagagcataatacctgaacgtgtgtctcttccaattcattatgttctacaattccctcttcaggttgtatttgtgcctattcctcaacacttccaatt |
9380402 |
T |
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| Q |
108 |
gaa |
110 |
Q |
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||| |
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| T |
9380403 |
gaa |
9380405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 5e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 5e-35
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 33012875 - 33012773
Alignment:
| Q |
8 |
aacagagcataatacctgaacgcgtgtctcttccagttcattatgttccacaattccctcttcaggttgtatttgtgcctattcctcaacacttccaatt |
107 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
33012875 |
aacagagcataatacctgaatctgtgtctcttccagttcagtatgttctacaattccctcttcaggttgtatttgtgtctgttcctcaacacttccaatt |
33012776 |
T |
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| Q |
108 |
gaa |
110 |
Q |
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||| |
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| T |
33012775 |
gaa |
33012773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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