View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4328-Insertion-22 (Length: 149)

Name: NF4328-Insertion-22
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4328-Insertion-22
NF4328-Insertion-22
[»] chr3 (17 HSPs)
chr3 (26-149)||(6850412-6850535)
chr3 (26-143)||(7748776-7748893)
chr3 (28-143)||(6915877-6915992)
chr3 (26-134)||(6898862-6898970)
chr3 (28-143)||(6881292-6881407)
chr3 (26-143)||(6141060-6141177)
chr3 (26-143)||(13271691-13271808)
chr3 (31-143)||(6244072-6244184)
chr3 (26-134)||(6723226-6723334)
chr3 (26-128)||(6167665-6167767)
chr3 (39-128)||(6257989-6258078)
chr3 (46-117)||(6592517-6592588)
chr3 (26-127)||(6236499-6236600)
chr3 (33-133)||(6264466-6264566)
chr3 (48-129)||(8570110-8570191)
chr3 (31-131)||(5266837-5266937)
chr3 (81-131)||(8588563-8588613)
[»] chr1 (1 HSPs)
chr1 (26-118)||(35141532-35141624)


Alignment Details
Target: chr3 (Bit Score: 108; Significance: 1e-54; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 26 - 149
Target Start/End: Complemental strand, 6850535 - 6850412
Alignment:
Q  26 tgggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaa 125  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6850535 tgggtaaatgataatccccgagccaatatgggaagctactgcctcggtagtctttgatggttagcctcatgaggtttccatttggttgaagagcttccaa 6850436  T
Q  126 gacagagacttgtgcttccattac 149  Q
    ||||||||||| | ||||||||||    
T  6850435 gacagagacttttacttccattac 6850412  T

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Target: chr3; HSP #2
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 7748776 - 7748893
Alignment:
Q  26 tgggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaa 125  Q
    |||||||||||||||| || ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| || ||    
T  7748776 tgggtaaatgataatcgccaagccaatttggaaagctactgcctctgtagtctttgatggttagcctcatgaggtttctatttggttggagagcctctaa 7748875  T
Q  126 gacagagacttgtgcttc 143  Q
    ||||||||| ||||||||    
T  7748876 gacagagacatgtgcttc 7748893  T

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Target: chr3; HSP #3
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 6915877 - 6915992
Alignment:
Q  28 ggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaaga 127  Q
    |||||||||||||| || |||||||||||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||    
T  6915877 ggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtgagcctcatgagatttctatttggttgaagagcctccaaga 6915976  T
Q  128 cagagacttgtgcttc 143  Q
     ||||| |||||||||    
T  6915977 tagagatttgtgcttc 6915992  T

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Target: chr3; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 6898862 - 6898970
Alignment:
Q  26 tgggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaa 125  Q
    |||||||||||| | |||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| || ||    
T  6898862 tgggtaaatgatgaaccccaagccaatttggaaatctactgcctctgtagtctttgatggttagcctcatgaggtttatatttggttgaagagcctctaa 6898961  T
Q  126 gacagagac 134  Q
    |||||||||    
T  6898962 gacagagac 6898970  T

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Target: chr3; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 6881292 - 6881407
Alignment:
Q  28 ggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaaga 127  Q
    |||||||||  |||||| ||||| | ||||||||||| ||||| |||||||||||||||||| ||| |||||||| |||||||||||||||| |||||||    
T  6881292 ggtaaatgacgatccccaagccagtttggaaagctaccgcctctgtagtctttgatggttagactcgtgaggtttatatttggttgaagagcctccaaga 6881391  T
Q  128 cagagacttgtgcttc 143  Q
    ||||| ||||||||||    
T  6881392 cagaggcttgtgcttc 6881407  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 6141060 - 6141177
Alignment:
Q  26 tgggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaa 125  Q
    |||||| ||||| |||||| |||||||  ||||||||||| |||| |||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  6141060 tgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaa 6141159  T
Q  126 gacagagacttgtgcttc 143  Q
    ||| |||||  |||||||    
T  6141160 gaccgagacacgtgcttc 6141177  T

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Target: chr3; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 13271808 - 13271691
Alignment:
Q  26 tgggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaa 125  Q
    |||||| ||||| |||||| ||||||| |||||||||||| |||| |||||| |||||||| || |||||||||| ||||||||||||||||||||||||    
T  13271808 tgggtagatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagtctcatgaggtgtctatttggttgaagagcttccaa 13271709  T
Q  126 gacagagacttgtgcttc 143  Q
    ||| |||||  |||||||    
T  13271708 gaccgagacacgtgcttc 13271691  T

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Target: chr3; HSP #8
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 6244072 - 6244184
Alignment:
Q  31 aaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaagacag 130  Q
    ||||||| |||||| ||||||| |||||||||||| |||| |||||| |||||||| ||||||| |||||| ||||||||||||||||| ||||||| ||    
T  6244072 aaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcacgaggttactatttggttgaagagcctccaagatag 6244171  T
Q  131 agacttgtgcttc 143  Q
    |||| ||||||||    
T  6244172 agacatgtgcttc 6244184  T

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Target: chr3; HSP #9
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 6723334 - 6723226
Alignment:
Q  26 tgggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaa 125  Q
    |||||||||||  || ||| | ||||| |||||||||||||||||  |||||||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  6723334 tgggtaaatgacgatacccaacccaatttggaaagctactgcctccatagtctttgatggtgagcctcatgaggtttttatttggttgaagagcctccaa 6723235  T
Q  126 gacagagac 134  Q
    |||||||||    
T  6723234 gacagagac 6723226  T

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Target: chr3; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 6167665 - 6167767
Alignment:
Q  26 tgggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaa 125  Q
    |||||| ||||| |||||| ||||||| |||||||||||| |||| |||||| |||||||| ||||||||||| |||||||||||||||||||| |||||    
T  6167665 tgggtagatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgagatttctatttggttgaagagcctccaa 6167764  T
Q  126 gac 128  Q
    |||    
T  6167765 gac 6167767  T

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Target: chr3; HSP #11
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 6257989 - 6258078
Alignment:
Q  39 atccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaagac 128  Q
    |||||| ||||||| |||||||||||| |||| |||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  6257989 atccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattaggttgaagagcctccaagac 6258078  T

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Target: chr3; HSP #12
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 6592588 - 6592517
Alignment:
Q  46 agccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaaga 117  Q
    ||||||| ||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  6592588 agccaatttggaaagcttctgcctctgtagtctttgatggtgagcctcatgaggtttctatttggttgaaga 6592517  T

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Target: chr3; HSP #13
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 6236499 - 6236600
Alignment:
Q  26 tgggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaa 125  Q
    |||||| ||||| |||||| |||||||  ||||||||||| |||| |||||| ||||||   ||||||||||| |||||||||||| ||||||| |||||    
T  6236499 tgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtcattgatgccgagcctcatgagatttctatttggtcgaagagcctccaa 6236598  T
Q  126 ga 127  Q
    ||    
T  6236599 ga 6236600  T

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Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 6264466 - 6264566
Alignment:
Q  33 atgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaagacagag 132  Q
    ||||| |||||| |||||||  ||||||||||| |||| |||||| |||||| | |||||| |||| |||||||||||| | ||||| |||||||| |||    
T  6264466 atgatgatccccaagccaattaggaaagctactacctctgtagtcattgatgctgagcctcgtgagatttctatttggtcgcagagcctccaagaccgag 6264565  T
Q  133 a 133  Q
    |    
T  6264566 a 6264566  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 8570191 - 8570110
Alignment:
Q  48 ccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaagaca 129  Q
    ||||| |||||||||||||||   ||||| | ||||||| |||||| | | ||| ||||||||||||||||| |||||||||    
T  8570191 ccaatttggaaagctactgccattgtagtatgtgatggtgagcctcttcaagttgctatttggttgaagagcatccaagaca 8570110  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 5266837 - 5266937
Alignment:
Q  31 aaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaagacag 130  Q
    |||||| || |||| ||||||| |||||| ||| ||||| ||||||  | |||||| ||| |  | ||||| ||||||||||||||||| ||||||||||    
T  5266837 aaatgacaacccccaagccaatttggaaaactagtgcctgggtagtgctcgatggtcagcttattaaggttgctatttggttgaagagcctccaagacag 5266936  T
Q  131 a 131  Q
    |    
T  5266937 a 5266937  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 8588563 - 8588613
Alignment:
Q  81 gatggttagcctcatgaggtttctatttggttgaagagcttccaagacaga 131  Q
    |||||| |||||| | | ||||||||||||||||||||| |||||||||||    
T  8588563 gatggtaagcctcttcaagtttctatttggttgaagagcctccaagacaga 8588613  T

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Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 35141624 - 35141532
Alignment:
Q  26 tgggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagag 118  Q
    |||||||||||| |||||| ||||||| |||||||||||| |||| |||||| |||||||| ||||||||||||||||||||||| |||||||    
T  35141624 tgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaagag 35141532  T

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